Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACMFHA_RS17825 Genome accession   NZ_CP179705
Coordinates   3708642..3709460 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain PR3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3703642..3714460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMFHA_RS17810 (ACMFHA_17810) pilE 3703859..3704284 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  ACMFHA_RS17815 (ACMFHA_17815) pilY2 3704281..3704763 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  ACMFHA_RS17820 (ACMFHA_17820) pilY1 3704776..3708630 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  ACMFHA_RS17825 (ACMFHA_17825) pilX 3708642..3709460 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACMFHA_RS17830 (ACMFHA_17830) pilW 3709457..3710458 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  ACMFHA_RS17835 (ACMFHA_17835) pilV 3710459..3711019 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  ACMFHA_RS17840 (ACMFHA_17840) fimU 3711013..3711486 (-) 474 WP_001214061.1 pilus assembly FimT family protein Machinery gene
  ACMFHA_RS17845 (ACMFHA_17845) ispH 3711656..3712606 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACMFHA_RS17850 (ACMFHA_17850) gmk 3712729..3713358 (+) 630 WP_000015937.1 guanylate kinase -
  ACMFHA_RS17855 (ACMFHA_17855) rpoZ 3713431..3713709 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACMFHA_RS17860 (ACMFHA_17860) - 3713748..3713877 (+) 130 Protein_3495 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1092698 ACMFHA_RS17825 WP_000149374.1 3708642..3709460(-) (pilX) [Acinetobacter baumannii strain PR3]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1092698 ACMFHA_RS17825 WP_000149374.1 3708642..3709460(-) (pilX) [Acinetobacter baumannii strain PR3]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment