Detailed information NTG1092559

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ACLSSQ_RS09735
• Genome accession: NZ_CP179682
• Coordinates: 2026525..2027898 (-)
• Length: 457 a.a.
• NCBI ID: WP_130458463.1
• Uniprot ID: -
• Organism: Azospira sp. APE16
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2021525..2032898

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLSSQ_RS09720 (ACLSSQ_09720)	-	2021990..2022307 (-)	318	WP_416242556.1	hypothetical protein	-
ACLSSQ_RS09725 (ACLSSQ_09725)	-	2023152..2025653 (-)	2502	WP_416242557.1	ABC transporter permease	-
ACLSSQ_RS09730 (ACLSSQ_09730)	-	2025822..2026427 (+)	606	WP_416242558.1	DUF5610 domain-containing protein	-
ACLSSQ_RS09735 (ACLSSQ_09735)	radA	2026525..2027898 (-)	1374	WP_130458463.1	DNA repair protein RadA	Machinery gene
ACLSSQ_RS09740 (ACLSSQ_09740)	-	2027932..2030556 (-)	2625	WP_416242559.1	PAS domain S-box protein	-
ACLSSQ_RS09745 (ACLSSQ_09745)	alr	2030796..2031887 (-)	1092	WP_416242560.1	alanine racemase	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 48646.09 Da
• Isoelectric Point: 7.6672

>NTDB_id=1092559 ACLSSQ_RS09735 WP_130458463.1 2026525..2027898(-) (radA) [Azospira sp. APE16]
MAKTKSIYTCTECGAQSPKWQGQCSACNAWNTLVETVAEAGGKGSGHRFESLAPGTPKLQALSEIETREAARLPTGLSEF
DRALGGGLVAGGVVLIGGDPGIGKSTLLLQALAALAPQHKVLYVSGEESGQQVALRARRLQLDVERLPLLAEINLERILG
VVQTEKPQVAVIDSIQTLWSDQLTSAPGSVAQVRECAAQLTRLAKQTGVTVILVGHVTKEGALAGPRVLEHIVDTVLYFE
GDTHSSFRLIRAVKNRYGAVNELGVFGMTDKGLKGVSNPSALFLSQHGQEVAGSCVLVTQEGTRPLLVEIQALVDTTMGG
SPRRLSVGLEQNRLAMLLAVLHRHAGIGCFDQDVFVNAVGGVKISEPAADLPVLLAIISSLKNRPLPEKLVVFGEVGLAG
EIRPAPRGQERLKEAAKLGFTRALVPEANKPRQPIPGLEVVAVSRIEQAVERLRDWE

Nucleotide

• Length: 1374 bp

>NTDB_id=1092559 ACLSSQ_RS09735 WP_130458463.1 2026525..2027898(-) (radA) [Azospira sp. APE16]
ATGGCGAAGACGAAAAGCATCTATACCTGCACCGAATGCGGTGCCCAGTCCCCCAAATGGCAGGGCCAGTGTTCCGCCTG
CAATGCCTGGAACACCCTGGTGGAAACCGTGGCCGAGGCCGGCGGCAAGGGCAGCGGCCACCGTTTCGAATCCCTGGCCC
CCGGCACGCCCAAGCTGCAGGCCCTCTCCGAGATCGAGACCCGGGAGGCGGCGCGCCTGCCCACGGGTCTGTCCGAATTT
GACCGGGCCCTGGGCGGCGGCCTGGTGGCCGGCGGCGTGGTGCTCATCGGCGGCGACCCGGGCATCGGCAAGAGCACCCT
GCTTTTGCAGGCCCTGGCCGCCCTGGCGCCCCAGCACAAGGTGCTCTACGTCAGCGGCGAAGAGTCGGGGCAGCAGGTGG
CCCTGCGGGCCCGGCGCCTGCAGCTGGACGTGGAGCGCCTGCCCCTGCTGGCGGAAATCAACCTGGAACGCATCCTCGGC
GTGGTGCAGACGGAAAAGCCCCAGGTGGCGGTGATCGACTCCATCCAGACCCTGTGGTCCGACCAGCTCACCTCGGCTCC
CGGCTCCGTGGCCCAGGTGCGCGAATGCGCCGCCCAGCTGACCCGGCTGGCCAAGCAGACCGGCGTCACCGTGATCCTGG
TGGGCCACGTGACCAAGGAAGGGGCCCTGGCCGGGCCCCGGGTGCTGGAACACATCGTCGATACGGTGCTGTACTTCGAG
GGCGACACCCATTCCTCCTTCCGCCTCATCCGGGCGGTGAAGAACCGCTACGGCGCGGTCAATGAACTGGGCGTCTTCGG
CATGACCGACAAGGGTCTCAAGGGCGTCTCCAACCCTTCGGCCCTGTTCCTTTCCCAGCACGGCCAGGAAGTGGCCGGCT
CCTGCGTCCTGGTGACCCAGGAAGGCACCCGGCCCCTGCTGGTGGAAATCCAGGCCCTGGTGGATACCACCATGGGCGGC
AGCCCGCGGCGCCTTTCCGTCGGCCTGGAGCAGAACCGGCTGGCCATGCTGCTGGCGGTGCTGCACCGCCACGCCGGCAT
CGGCTGCTTCGACCAGGACGTCTTCGTCAATGCGGTGGGCGGGGTCAAGATCAGCGAACCGGCGGCGGATCTGCCGGTGC
TGCTGGCCATCATTTCCTCCCTGAAGAACCGGCCCCTGCCGGAAAAGCTGGTGGTCTTCGGCGAAGTGGGCCTGGCCGGC
GAGATCCGCCCGGCGCCCCGGGGCCAGGAACGGCTCAAGGAAGCGGCCAAGCTGGGCTTCACCCGGGCCCTGGTGCCCGA
GGCCAACAAGCCGCGCCAGCCCATTCCCGGGCTGGAGGTGGTGGCGGTGAGCCGCATCGAACAGGCGGTGGAGCGGCTGC
GGGACTGGGAGTAG

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (69-221)

• Subunit ChlI of Mg-chelatase (ChlI) (349-429)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.684	99.781	0.486
radA	Streptococcus mitis SK321	47.368	99.781	0.473
radA	Streptococcus pneumoniae D39	47.033	99.562	0.468
radA	Streptococcus pneumoniae TIGR4	47.033	99.562	0.468
radA	Streptococcus mitis NCTC 12261	47.033	99.562	0.468
radA	Streptococcus pneumoniae R6	47.033	99.562	0.468
radA	Streptococcus pneumoniae Rx1	47.033	99.562	0.468