Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACME8E_RS22270 Genome accession   NZ_CP178917
Coordinates   4949917..4951767 (+) Length   616 a.a.
NCBI ID   WP_413986153.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain AF2927     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4944917..4956767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACME8E_RS22250 - 4945605..4946621 (+) 1017 WP_413986151.1 CobW family GTP-binding protein -
  ACME8E_RS22255 - 4946650..4947443 (+) 794 Protein_4294 GTP cyclohydrolase, FolE2/MptA family -
  ACME8E_RS22260 - 4947674..4948081 (+) 408 WP_013371190.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACME8E_RS22265 rcrP 4948161..4949930 (+) 1770 WP_413986152.1 ABC transporter ATP-binding protein Regulator
  ACME8E_RS22270 rcrQ 4949917..4951767 (+) 1851 WP_413986153.1 ABC transporter ATP-binding protein Regulator
  ACME8E_RS22275 - 4952150..4952608 (-) 459 WP_413986154.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACME8E_RS22280 - 4953414..4953941 (+) 528 WP_413986155.1 sigma-70 family RNA polymerase sigma factor -
  ACME8E_RS22285 - 4953928..4955403 (+) 1476 WP_413986156.1 DUF4179 domain-containing protein -
  ACME8E_RS22290 - 4956185..4956186 (-) 2 WP_413986157.1 IS5 family transposase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67996.72 Da        Isoelectric Point: 6.9075

>NTDB_id=1092474 ACME8E_RS22270 WP_413986153.1 4949917..4951767(+) (rcrQ) [Paenibacillus polymyxa strain AF2927]
MDKNEHTVGSKHIKMKQQGPMGKGPTEGRGTGKKANDFRKNSRQLLSYIKAYAPMIILSMVLALAGSVFNVIGPDKLSDI
ANLIQEGIVTGIDINAIQKIVLVLVVLYGLGLIFNYFQGFITVTVSQRLTKKMRTELSQKINHMPLKYFDATSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTISGIVATLIGFSLMTVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEKAAKEVFHGINGRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCIVGALLVNQHVITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLDEEELKDESDKTMKLDNAKGDVEFKHVRFGYNEDHMIIKDFSMKA
EAGQKVAIVGPTGAGKTTLVNLLMRFYELNGGEIYIDGTPISQLTRENVHKLFCMVLQDTWLFEGTIRENIVFSQDHVTD
EQVEAACRAVGLHSFLKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDRLTV
GKTSFVIAHRLSTIKNADLILVMKDGNIIETGNHGELLGKGGFYADLYNSQFENAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=1092474 ACME8E_RS22270 WP_413986153.1 4949917..4951767(+) (rcrQ) [Paenibacillus polymyxa strain AF2927]
ATGGACAAGAATGAACACACCGTCGGCAGTAAGCATATCAAAATGAAACAGCAAGGTCCCATGGGTAAAGGTCCTACGGA
AGGGAGGGGGACTGGTAAAAAAGCGAATGATTTTAGAAAAAACTCACGCCAGCTCTTATCCTACATCAAGGCCTATGCGC
CTATGATTATCCTCTCTATGGTGCTGGCACTGGCCGGTTCCGTCTTCAATGTGATTGGTCCGGATAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATTGTAACAGGGATTGATATAAATGCTATTCAGAAGATTGTTCTTGTACTGGTAGTTTT
GTATGGTCTCGGCCTTATCTTTAATTATTTTCAAGGATTCATTACGGTAACTGTGTCACAGCGCCTTACAAAGAAGATGC
GGACAGAACTGTCCCAAAAAATCAATCATATGCCTTTGAAGTATTTTGATGCTACGAGCTATGGTAATGTGCTCAGCCGT
GTGACTAACGATGTCGATACCATCGGACAAACGTTAAACAACAGTCTCGGCACACTTGTCAGCGCACTGGCAACCTTTGT
GGGTGCATTGATTATGATGCTGTATACGAACTGGATCATGACCATTTCCGGGATTGTAGCTACGCTGATTGGTTTTTCAC
TGATGACCGTAATTATGAAGCATTCACAAAAATATTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATT
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGAGAAAAAGCAGCCAAGGAAGTGTTCCATGGCATTAA
TGGCCGCTTGTATACAAATGCATGGAAATCCCAGTTCATGTCTGGCCTGATGATGCCGGTTATGATGTTCATCGGGAATT
TTGGTTATGTAGCGGTCTGTATCGTGGGCGCTTTGCTGGTGAACCAACATGTTATAACGATCGGAACTATTGTGGCCTTT
ATGGTGTATATTCGTCTATTTACACAGCCCTTGTCACAGTTGGCGCAGGCTGCAACCAATTTGCAATCGGCGGCTGCTGC
CAGTGAACGTGTATTCGAATTTCTGGATGAAGAAGAATTGAAAGATGAAAGTGACAAGACCATGAAGCTGGATAACGCCA
AAGGGGATGTTGAATTCAAACATGTTCGTTTCGGTTATAACGAAGACCATATGATTATCAAAGACTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAGTCGCTATTGTTGGCCCGACAGGTGCTGGTAAGACGACGCTCGTGAATTTGCTCATGCGGTTCTA
TGAGCTGAACGGAGGGGAAATTTATATTGATGGAACTCCGATCAGCCAATTAACACGTGAGAATGTTCATAAATTATTCT
GTATGGTACTGCAGGATACATGGCTGTTTGAAGGAACGATTCGTGAGAATATCGTCTTTTCCCAAGACCATGTTACCGAT
GAACAGGTAGAAGCCGCATGTAGAGCAGTGGGTCTGCACAGCTTCCTTAAAACTCTGCCGCAGGGCTATGATACAGTACT
AGACGACAAAGCCAATCTCTCTGCTGGCCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATGCGCCTATGC
TCATACTGGACGAAGCCACAAGTTCGGTCGATACGCGTACGGAGTTGCTGATTCAACAAGCGATGGACCGACTTACTGTA
GGGAAAACCTCTTTTGTGATTGCCCACCGTCTCTCAACGATTAAGAACGCCGATCTGATTCTGGTCATGAAGGACGGTAA
CATTATCGAAACGGGTAATCATGGAGAATTGCTGGGTAAAGGCGGATTCTATGCCGATTTATATAACAGCCAGTTTGAAA
ATGCATCCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(57-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.415

92.37

0.521

Multiple sequence alignment