Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACME8E_RS22265 Genome accession   NZ_CP178917
Coordinates   4948161..4949930 (+) Length   589 a.a.
NCBI ID   WP_413986152.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain AF2927     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4943161..4954930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACME8E_RS22235 - 4943449..4944252 (+) 804 WP_413986150.1 AAA family ATPase -
  ACME8E_RS22240 - 4944740..4944862 (+) 123 WP_413987567.1 hypothetical protein -
  ACME8E_RS22245 rpsN 4944893..4945162 (+) 270 WP_025678316.1 30S ribosomal protein S14 -
  ACME8E_RS22250 - 4945605..4946621 (+) 1017 WP_413986151.1 CobW family GTP-binding protein -
  ACME8E_RS22255 - 4946650..4947443 (+) 794 Protein_4294 GTP cyclohydrolase, FolE2/MptA family -
  ACME8E_RS22260 - 4947674..4948081 (+) 408 WP_013371190.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACME8E_RS22265 rcrP 4948161..4949930 (+) 1770 WP_413986152.1 ABC transporter ATP-binding protein Regulator
  ACME8E_RS22270 rcrQ 4949917..4951767 (+) 1851 WP_413986153.1 ABC transporter ATP-binding protein Regulator
  ACME8E_RS22275 - 4952150..4952608 (-) 459 WP_413986154.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACME8E_RS22280 - 4953414..4953941 (+) 528 WP_413986155.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65054.41 Da        Isoelectric Point: 7.0453

>NTDB_id=1092473 ACME8E_RS22265 WP_413986152.1 4948161..4949930(+) (rcrP) [Paenibacillus polymyxa strain AF2927]
MLKIFKYLKKNEWMFVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPMSELLIPGIYMLLCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKALSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIAKIADKNWQWTAS
TGVAVAVLILMLSVIVIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADQYLEEKFGQANAELTNTNLFANRLMAM
VGPGMTFIMSGLSVSIYWIGTYLINGAAVPDRITLFSNMVVFSSYAVQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SRIIDGHETAGEEGVMGQVEFRNVSFKYPDAEEPVLRNISFTAKQGETVAFIGATGSGKTSVINLISRFYDVTEGEVLVD
GVNVRNYKQQTLHNKIGYVPQRAVLFSGTVASNVSYGDNGRAEVSEKLVKAAVEIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRVLRSALKQETGHATTLIVAQRIGTIKDADRIIVLDQGEIVGNGT
HEELMANCSTYQEIAYSQLSKEELVHGQE

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=1092473 ACME8E_RS22265 WP_413986152.1 4948161..4949930(+) (rcrP) [Paenibacillus polymyxa strain AF2927]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGATGTTCGTGCTTTGCAGCTTGGCCTTCATCGTTGTGCAGGT
GTGGCTGGATTTGAAGCTGCCTGATTATATGGCCGAAATTACAACCAAGCTGCAAACCGCAGGAACGCCGATGTCGGAAC
TGCTAATTCCCGGTATTTATATGCTGTTATGTGCTGTCGGCAGTATGATTGCATCTATTATTGTCGGCTATTTTGCGGCA
AAGGTCGCGGCAGGGCTGGCCATGCGTCTGCGTGCGATGGTCTTTGACAAGGCCTTATCTTTTTCCATGGAAGAGATGAA
CAGCTTTTCAACAGCCAGCCTTATCACCCGCTCCACGAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCGCCGATTCTGGCCGTGTGGGCCATTGCAAAGATTGCGGATAAAAACTGGCAGTGGACCGCCTCT
ACAGGAGTGGCTGTGGCTGTCCTGATCCTGATGCTGAGTGTCATTGTTATTTTCGCTCTTCCGAGTTTCCAAAAAATCCA
ACGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGACCGGGCTTCGGGTGGTGCGCGCTTATAATGCAGATC
AGTATCTGGAGGAGAAGTTCGGACAGGCCAATGCAGAATTGACAAATACAAACCTGTTTGCGAACCGGTTAATGGCAATG
GTTGGTCCGGGGATGACCTTTATTATGTCCGGTCTGAGTGTCTCGATCTATTGGATTGGCACATACCTGATTAACGGAGC
GGCCGTGCCGGACCGCATTACGCTATTCTCTAATATGGTCGTATTCTCCTCATATGCGGTGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATATTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATTATGGAGGTATTGAATACCGAA
TCTCGCATCATCGACGGACATGAGACCGCTGGAGAAGAGGGCGTTATGGGTCAGGTGGAATTTCGTAATGTCAGCTTCAA
ATATCCGGATGCCGAGGAGCCTGTGCTTCGCAACATTAGCTTTACGGCAAAACAGGGCGAGACGGTTGCCTTTATTGGTG
CAACAGGCAGCGGCAAAACCAGTGTGATCAATCTGATTTCCCGTTTCTACGATGTGACTGAGGGTGAGGTACTTGTGGAT
GGCGTGAATGTCAGAAATTATAAGCAGCAGACACTCCATAACAAAATCGGGTATGTCCCACAGAGAGCCGTGCTTTTCAG
CGGTACAGTGGCTTCCAACGTTTCGTATGGCGATAACGGCAGAGCAGAAGTTTCGGAGAAACTCGTCAAAGCCGCTGTGG
AGATTGCCCAGGGTACGGAGTTTGTCGAAAAAATGGACGGTCAATATCAAGGACGGATTTCACAAGGTGGAGCGAACGTG
TCAGGTGGTCAAAAGCAGCGTCTGTCCATTGCGCGTGCCATCTACCGTCAGCCAGAGATTTACATCTTCGATGATTCCTT
CTCGGCACTCGACTACAGAACAGACCGGGTCCTGCGCTCTGCGCTTAAACAAGAAACCGGCCATGCTACGACACTCATTG
TGGCTCAGCGCATAGGCACCATTAAGGACGCTGACCGGATTATTGTTCTCGACCAGGGCGAGATTGTAGGGAACGGCACA
CATGAAGAGCTGATGGCGAATTGCAGCACCTATCAGGAAATCGCTTATTCGCAGCTTTCGAAGGAGGAACTCGTACATGG
ACAAGAATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.667

100

0.526

Multiple sequence alignment