Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACME8E_RS05735 Genome accession   NZ_CP178917
Coordinates   1272372..1273325 (-) Length   317 a.a.
NCBI ID   WP_413987028.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain AF2927     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1267372..1278325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACME8E_RS05710 - 1267374..1268810 (+) 1437 WP_413987025.1 hypothetical protein -
  ACME8E_RS05715 - 1268910..1269653 (-) 744 WP_413987026.1 alpha/beta hydrolase -
  ACME8E_RS05720 - 1269687..1270667 (-) 981 WP_264217642.1 siderophore ABC transporter substrate-binding protein -
  ACME8E_RS05725 - 1270680..1271438 (-) 759 WP_413987027.1 ABC transporter ATP-binding protein -
  ACME8E_RS05730 - 1271432..1272382 (-) 951 WP_017425553.1 iron chelate uptake ABC transporter family permease subunit -
  ACME8E_RS05735 ceuB 1272372..1273325 (-) 954 WP_413987028.1 ABC transporter permease Machinery gene
  ACME8E_RS05740 - 1273586..1274263 (+) 678 WP_025674742.1 response regulator transcription factor -
  ACME8E_RS05745 - 1274264..1275184 (+) 921 WP_064963589.1 sensor histidine kinase -
  ACME8E_RS05750 - 1275293..1275970 (+) 678 WP_264217640.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34704.71 Da        Isoelectric Point: 9.8898

>NTDB_id=1092454 ACME8E_RS05735 WP_413987028.1 1272372..1273325(-) (ceuB) [Paenibacillus polymyxa strain AF2927]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLSNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLKRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1092454 ACME8E_RS05735 WP_413987028.1 1272372..1273325(-) (ceuB) [Paenibacillus polymyxa strain AF2927]
ATGAAATTGCGCTATTTAATACTGGCTTTTCTGGTACTGGCTTTCGCCTCGGTGTTCATCGGTGTTCATGATGTGACTCC
ACTTGATTTGTTCCACTTATCTAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTCCCACGTTTGATCAGCATCATTA
TTGCAGGGGCGAGTATGAGTATCTGCGGGCTCATCATGCAGCAGCTTACTCGGAACCGATTTGTTTCGCCTACCACCGCA
GGGACGATGGATGCGGCACGATTAGGTGTGCTGATGGCCATTATGGTGTTTGGAGCGGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTCGCTTTAGGGGGAACGCTGATTTTCATGAAGATACTGGATAAAATCCGGTTCAAGGACCCGGTAT
TTATTCCGCTTGTTGGTCTGATGTTTGGGGGCATTTTAAATTCGGTGACGACTTTTTTTGCTTACAAATACAATCTGATT
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATTATGAGTGGTCGCTATGAGATGCTGTATCTTAGTGTTCC
TTTGGTCGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGTATGGGTGAGGATTTTGCAGCCAACTTGGGCG
TACATTACAAGCGCACCGTCAATGTGGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTCATCTTAACCGTTGGTACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGTATGTATATGGGGGATAATCTGAAAAAGAGCCTGGCTCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAAATATCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAAGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.429

99.369

0.511

Multiple sequence alignment