Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACL9SD_RS13235 Genome accession   NZ_CP178914
Coordinates   2660861..2661661 (-) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain IFST-745     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2655861..2666661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL9SD_RS13215 (ACL9SD_13215) - 2657816..2658070 (+) 255 WP_048350556.1 DUF2627 domain-containing protein -
  ACL9SD_RS13220 (ACL9SD_13220) - 2658181..2658906 (-) 726 WP_048349991.1 glycerophosphodiester phosphodiesterase -
  ACL9SD_RS13225 (ACL9SD_13225) - 2659041..2659661 (-) 621 WP_048349990.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ACL9SD_RS13230 (ACL9SD_13230) - 2659695..2660015 (-) 321 WP_048349989.1 membrane lipoprotein lipid attachment site-containing protein -
  ACL9SD_RS13235 (ACL9SD_13235) spo0A 2660861..2661661 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  ACL9SD_RS13240 (ACL9SD_13240) spoIVB 2661951..2663201 (-) 1251 WP_230459179.1 SpoIVB peptidase -
  ACL9SD_RS13245 (ACL9SD_13245) recN 2663416..2665146 (-) 1731 WP_048349987.1 DNA repair protein RecN Machinery gene
  ACL9SD_RS13250 (ACL9SD_13250) ahrC 2665178..2665627 (-) 450 WP_020452129.1 transcriptional regulator AhrC/ArgR -
  ACL9SD_RS13255 (ACL9SD_13255) - 2665791..2666636 (-) 846 WP_048349986.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=1092391 ACL9SD_RS13235 WP_003183361.1 2660861..2661661(-) (spo0A) [Bacillus paralicheniformis strain IFST-745]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1092391 ACL9SD_RS13235 WP_003183361.1 2660861..2661661(-) (spo0A) [Bacillus paralicheniformis strain IFST-745]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAAAG
CGACATGGAAGTGCTTGGTGTCGCATACAACGGACAGGAATGCCTTTCGTTGTTTAAAGACAAGGAGCCCGATGTGCTTG
TGCTGGATATTATTATGCCTCATCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGTCAGGAAGACGTGACGAAAAAAGCTGTAGATTTGGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAACTTAGTCGGCCATATCCGCCAGGTTAGCGGAAACGGGTCTCAATTGACACACCGTGCCC
CGTCCTCTCAAAGCAGTGTGCTTCGGCCGCAGCCGGAATCGCCGAAGAAAAACCTGGATGCCAGCATCACGACCATCATC
CACGAGATCGGCGTGCCCGCTCATATAAAAGGCTATTTATACTTAAGGGAAGCCATCTCCATGGTGTATAATGACATCGA
ACTGCTCGGGAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACAACTGCAAGCCGAGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAATATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCAAAGCCGACGAATTCAGAATTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925

Multiple sequence alignment