Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACL9SD_RS02130 Genome accession   NZ_CP178914
Coordinates   393183..393629 (-) Length   148 a.a.
NCBI ID   WP_080131222.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain IFST-745     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 388183..398629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL9SD_RS02105 (ACL9SD_02105) - 388798..389646 (-) 849 WP_196220020.1 transporter substrate-binding domain-containing protein -
  ACL9SD_RS02110 (ACL9SD_02110) - 389858..390409 (+) 552 WP_080131218.1 NAD(P)H-dependent oxidoreductase -
  ACL9SD_RS02115 (ACL9SD_02115) - 390495..391220 (+) 726 WP_080131219.1 AAA family ATPase -
  ACL9SD_RS02120 (ACL9SD_02120) - 391290..392726 (+) 1437 WP_080131220.1 glycoside hydrolase family 1 protein -
  ACL9SD_RS02125 (ACL9SD_02125) nin/comJ 392767..393165 (-) 399 WP_080131221.1 competence protein ComJ Regulator
  ACL9SD_RS02130 (ACL9SD_02130) nucA/comI 393183..393629 (-) 447 WP_080131222.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACL9SD_RS02135 (ACL9SD_02135) - 394106..394909 (+) 804 WP_080131224.1 serine/threonine protein kinase -
  ACL9SD_RS02140 (ACL9SD_02140) - 394929..396632 (-) 1704 WP_080131225.1 methyl-accepting chemotaxis protein -
  ACL9SD_RS02145 (ACL9SD_02145) - 396750..397490 (-) 741 WP_080131226.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16251.28 Da        Isoelectric Point: 5.7009

>NTDB_id=1092361 ACL9SD_RS02130 WP_080131222.1 393183..393629(-) (nucA/comI) [Bacillus paralicheniformis strain IFST-745]
MDKIKSLLITLLAVAVVIIGIISGDFFTSEHQPSGRQNGSNYDEVLIFPSDRYPETGAHIQKAIKKGHSKICTIDRDGAD
ERRKESLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKILFKIK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1092361 ACL9SD_RS02130 WP_080131222.1 393183..393629(-) (nucA/comI) [Bacillus paralicheniformis strain IFST-745]
ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGCATTATATCCGGCGACTTTTT
CACTTCAGAACACCAGCCTTCAGGCCGGCAAAACGGCTCAAACTATGATGAAGTGCTGATTTTTCCGTCGGACCGCTACC
CTGAAACAGGCGCGCACATTCAAAAGGCCATCAAAAAAGGGCATTCCAAAATCTGCACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGAATCGTTAAAAGATGTTCCTTCCAAATCGGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCCGTCGAGTATATCAGTCCTTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGCACGAAAATACTTTTCAAGATTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.946

99.324

0.635

Multiple sequence alignment