Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACGHUZ_RS00455 Genome accession   NZ_AP031418
Coordinates   117747..119588 (+) Length   613 a.a.
NCBI ID   WP_390591302.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain i01-0019-E5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 112747..124588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHUZ_RS00430 (I010019E5_00820) thiF 112815..113528 (-) 714 WP_003807371.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  ACGHUZ_RS00435 (I010019E5_00830) thiS 113581..113775 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  ACGHUZ_RS00440 (I010019E5_00840) - 114212..115180 (+) 969 WP_085380675.1 aldo/keto reductase -
  ACGHUZ_RS00445 (I010019E5_00850) - 115364..115855 (+) 492 WP_003807375.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACGHUZ_RS00450 (I010019E5_00860) rcrP 115984..117735 (+) 1752 WP_195247970.1 ABC transporter ATP-binding protein Regulator
  ACGHUZ_RS00455 (I010019E5_00870) rcrQ 117747..119588 (+) 1842 WP_390591302.1 ABC transporter ATP-binding protein Regulator
  ACGHUZ_RS00460 (I010019E5_00880) - 119759..120739 (+) 981 WP_021912920.1 aldo/keto reductase family oxidoreductase -
  ACGHUZ_RS00465 (I010019E5_00890) - 120824..121876 (-) 1053 WP_390591305.1 FAD:protein FMN transferase -
  ACGHUZ_RS00470 (I010019E5_00900) - 122718..124403 (+) 1686 WP_390591898.1 FTR1 family protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 67421.21 Da        Isoelectric Point: 6.7614

>NTDB_id=109227 ACGHUZ_RS00455 WP_390591302.1 117747..119588(+) (rcrQ) [Bifidobacterium adolescentis strain i01-0019-E5]
MPRGMGRGRGAVEKPKDFGGVMKKLVKFCSRYIPVMIFALVLGAAGTVCQIIGPDKLKDMTNEITKGLPAMVHGKPVMNS
IDMDAVSRIAWLLVALYVGYALLSYLQSWLMANVTQRTAQQLREAISQKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSVGSLITSVTLFFGALIMMFYNNVTMTLCAIGSALLGLIIMGVIMKVSQKYFTRQQVALGDVNGHVEEMYTGHTVVK
AYCGEERSIEQFEKYNKDLYVSGWKSQFLSGLMMPIMNFVGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEEPELSDETGKQALLGVGADGKPQPVRGDVEFSHVRFGYDADKTIINDFSASVKAG
QKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGIDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKKDVTDEQI
VAACKAVGLHHYIMSLPNGYDTVLDDKASLSQGQRQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRT
SFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLAKGGFYADIYNSQFTLAE

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=109227 ACGHUZ_RS00455 WP_390591302.1 117747..119588(+) (rcrQ) [Bifidobacterium adolescentis strain i01-0019-E5]
ATGCCTAGAGGAATGGGACGCGGCCGTGGGGCCGTGGAAAAGCCGAAGGACTTCGGCGGAGTGATGAAGAAGCTCGTGAA
ATTCTGCAGCCGGTACATTCCGGTGATGATTTTCGCGCTGGTTCTGGGCGCTGCCGGCACGGTGTGCCAGATCATCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCACGAAGGGTCTGCCGGCCATGGTGCACGGCAAGCCCGTCATGAATTCG
ATCGATATGGACGCGGTGTCGCGCATCGCATGGCTGCTCGTCGCGCTGTACGTCGGGTACGCGCTGCTGAGCTACCTGCA
AAGCTGGCTGATGGCCAACGTCACGCAACGCACGGCACAGCAGCTACGTGAGGCGATCAGCCAGAAAATCAATCGCCTGC
CGCTGAAATATTTCGACAAAGTCAGCTACGGCGACGTGCTGAGCCGCATCACCAACGACGTCGACGCGATCGGACAGACG
CTCGGCCAGTCGGTCGGCTCGCTCATCACATCGGTCACGCTGTTCTTCGGCGCGCTCATCATGATGTTCTACAACAACGT
GACCATGACGCTGTGCGCCATCGGCTCCGCGCTGCTCGGCCTGATCATCATGGGCGTGATCATGAAGGTGTCGCAGAAGT
ACTTCACCCGCCAGCAGGTGGCGCTCGGCGACGTCAACGGCCACGTCGAGGAAATGTACACCGGCCACACCGTGGTCAAG
GCATACTGCGGCGAGGAACGCTCCATCGAGCAGTTCGAGAAGTACAACAAAGACCTGTACGTGTCCGGCTGGAAGAGCCA
GTTCCTGTCCGGCCTGATGATGCCGATCATGAACTTCGTCGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTCGGCGCGG
TGCTCGCCATGGACGGCAAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACGCAGCCGCTG
TCCCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCGGCCGCATCCGAACGCGTCTTCGGCTTCCTTGAGGAGCC
GGAACTGTCCGACGAAACCGGCAAGCAGGCGCTGCTGGGCGTCGGCGCGGACGGCAAGCCGCAGCCGGTGCGCGGCGACG
TGGAATTCAGCCACGTGCGCTTCGGCTACGACGCGGACAAGACCATCATCAACGACTTCTCCGCGTCCGTGAAGGCCGGC
CAGAAGGTGGCTATCGTCGGCCCGACCGGCGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTACGAGATTTC
CGGTGGCACGATTTCGATCGACGGCATCGACACCAAGTCCGTACCGCGTTGGAACGTGCACGACCAGTTCTCCATGGTGC
TGCAGGACACGTGGGTGTTCCGTGGAACAGTGCGTGAAAACATCGCGTATTCGAAGAAGGACGTCACCGACGAGCAGATC
GTGGCCGCATGCAAGGCCGTCGGCCTGCACCACTACATCATGTCGTTGCCGAACGGCTACGACACCGTGCTCGACGACAA
GGCGTCGCTTTCCCAGGGCCAGCGCCAGCTGCTGACGATCGCCCGCGCGATGGTGGAGGACGCGCCGATCCTGATCCTCG
ACGAGGCCACCTCCTCGGTCGATACACGCACCGAGGAGCTGATCCAGAAGGCGATGGACGCGCTGACCGTGGGCCGCACG
AGCTTCGTGATCGCGCACCGCCTGTCCACCATCCGCGACGCCGACATGATCCTGGTGATGAACGGCGGCGACATCGTGGA
ACGCGGCACGCACGAGGAACTGCTCGCCAAGGGCGGCTTCTACGCCGACATCTACAACAGCCAGTTCACGCTGGCCGAGT
GA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(36-320)

ABC transporter (ABC_tran)

(391-538)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.315

96.411

0.524

Multiple sequence alignment