Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACGHUZ_RS00450 Genome accession   NZ_AP031418
Coordinates   115984..117735 (+) Length   583 a.a.
NCBI ID   WP_195247970.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain i01-0019-E5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 110984..122735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHUZ_RS00425 (I010019E5_00810) - 111744..112658 (-) 915 WP_021912915.1 thiazole synthase -
  ACGHUZ_RS00430 (I010019E5_00820) thiF 112815..113528 (-) 714 WP_003807371.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  ACGHUZ_RS00435 (I010019E5_00830) thiS 113581..113775 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  ACGHUZ_RS00440 (I010019E5_00840) - 114212..115180 (+) 969 WP_085380675.1 aldo/keto reductase -
  ACGHUZ_RS00445 (I010019E5_00850) - 115364..115855 (+) 492 WP_003807375.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACGHUZ_RS00450 (I010019E5_00860) rcrP 115984..117735 (+) 1752 WP_195247970.1 ABC transporter ATP-binding protein Regulator
  ACGHUZ_RS00455 (I010019E5_00870) rcrQ 117747..119588 (+) 1842 WP_390591302.1 ABC transporter ATP-binding protein Regulator
  ACGHUZ_RS00460 (I010019E5_00880) - 119759..120739 (+) 981 WP_021912920.1 aldo/keto reductase family oxidoreductase -
  ACGHUZ_RS00465 (I010019E5_00890) - 120824..121876 (-) 1053 WP_390591305.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64497.60 Da        Isoelectric Point: 5.3140

>NTDB_id=109226 ACGHUZ_RS00450 WP_195247970.1 115984..117735(+) (rcrP) [Bifidobacterium adolescentis strain i01-0019-E5]
MLRIVRYLSKAEIGQMLVALVSIVGQIWLDLTLPDYMADITQLVETPGSEMRDIWVAGGKMLLVSLGSAACAIVTGFIAA
RVGASFSQRLRSLEFNKVESFGPAEMNRFSTASLITRSTNDITQIQMFITMGLMMIVKAPIMAVWAVCKIAGKGFDWTLA
TGIAVAILLVVIAVLMHFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTEANKELTETQLFTNRAMAI
MMPLMNTIMNGLMLAVYWIGAYLIDAADAVDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTE
PMVTDGTQDAGKPGEEGEIEFRNVSFAYPDSRQAMLEGVNFKAKKGQTVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYKLKALRDKIGYVPQQSFLFKGTIASNVAYGDTDRDDDTVRRACDVAQATEFIDKKQKKYDSGISQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEKEAKDSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHEE
LLDTCEVYRQIAESQLSEDELKR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=109226 ACGHUZ_RS00450 WP_195247970.1 115984..117735(+) (rcrP) [Bifidobacterium adolescentis strain i01-0019-E5]
ATGCTTCGCATCGTACGATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCGTCGCGCTGGTCAGCATCGTCGGTCAGAT
CTGGCTTGACCTGACCCTGCCGGACTACATGGCCGACATCACGCAGCTCGTCGAAACCCCCGGCAGCGAAATGCGCGACA
TCTGGGTGGCCGGCGGCAAAATGCTGCTCGTCTCGCTCGGCTCGGCGGCCTGCGCCATCGTCACCGGCTTCATCGCCGCG
CGCGTGGGCGCCTCGTTCAGCCAGCGCCTGCGTTCGCTCGAATTCAACAAGGTGGAAAGCTTCGGACCGGCGGAAATGAA
CCGTTTCTCCACCGCGTCGCTCATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCCTCA
TGATGATCGTCAAAGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAGATCGCAGGAAAGGGCTTCGATTGGACGCTCGCA
ACCGGCATCGCCGTGGCCATCCTGCTGGTGGTCATCGCCGTGCTCATGCACTTCGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAACATCAACCTTGTGGCCCGCGAGAATCTCACCGGACTGCGCGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAAGCCAAGTTCACCGAAGCCAACAAGGAACTCACCGAAACCCAGCTGTTCACCAACCGCGCCATGGCCATC
ATGATGCCGTTGATGAACACCATCATGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCGTACCTCATCGACGCTGC
CGACGCCGTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTCATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCGCGAGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAG
CCGATGGTCACCGACGGCACGCAGGACGCGGGCAAGCCGGGCGAGGAAGGCGAAATCGAATTCCGCAATGTGAGCTTCGC
CTACCCCGACTCGCGTCAGGCCATGTTGGAAGGCGTCAATTTCAAAGCCAAGAAGGGTCAGACGGTGGCGTTCATCGGCT
CGACCGGCTCCGGCAAATCGTCCCTCATCAACCTCGTGCCGCGTTTCTACGACGCCACGCAAGGCGAGGTGCTCGTCGAC
GGCGTCAACGTGCGCGACTACAAGCTGAAGGCGTTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCGTTCCTGTTCAA
GGGAACGATCGCCAGCAACGTCGCGTACGGAGATACGGACCGCGACGACGACACCGTGCGCCGCGCATGCGACGTCGCGC
AGGCGACGGAATTCATCGACAAAAAGCAGAAGAAGTACGATTCCGGCATTTCGCAGGGCGGTTCCAACGTTTCGGGCGGG
CAGAAGCAGCGTCTGTCGATCGCACGCGCCGTCTACCGTCATCCGGAAATCCTGATCTTCGACGATTCCTTCTCCGCGCT
CGACTTCAAAACCGACCGTGCCGTGCGTGACGCGCTCGAAAAGGAAGCGAAGGATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATCATGAATGCCGACCGCATCATCGTGCTCGATGACGGCAAAGTGGTCGGCCAGGGCACGCACGAGGAA
CTGCTCGACACGTGCGAAGTGTATCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAGCTGAAGCGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-503)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.251

100

0.515

Multiple sequence alignment