Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACKGJ9_RS18085 Genome accession   NZ_CP178862
Coordinates   3561351..3561947 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain KPZ2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3556351..3566947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKGJ9_RS18070 helD 3556559..3558613 (-) 2055 WP_002898429.1 DNA helicase IV -
  ACKGJ9_RS18075 - 3558738..3559184 (+) 447 WP_002898425.1 YccF domain-containing protein -
  ACKGJ9_RS18080 yccS 3559202..3561337 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ACKGJ9_RS18085 sxy/tfoX 3561351..3561947 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  ACKGJ9_RS18090 sulA 3562296..3562805 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ACKGJ9_RS18095 ompA 3563158..3564228 (+) 1071 WP_062954987.1 porin OmpA -
  ACKGJ9_RS18100 matP 3564360..3564812 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACKGJ9_RS18105 - 3564998..3566755 (+) 1758 WP_002898401.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=1092019 ACKGJ9_RS18085 WP_004150836.1 3561351..3561947(-) (sxy/tfoX) [Klebsiella pneumoniae strain KPZ2]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1092019 ACKGJ9_RS18085 WP_004150836.1 3561351..3561947(-) (sxy/tfoX) [Klebsiella pneumoniae strain KPZ2]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment