Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACGHJ8_RS09300 Genome accession   NZ_AP031415
Coordinates   1780817..1782640 (-) Length   607 a.a.
NCBI ID   WP_390539966.1    Uniprot ID   -
Organism   Massilimicrobiota timonensis strain f30     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1775817..1787640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHJ8_RS09285 (F300043A5_18190) - 1776273..1777277 (-) 1005 WP_390539960.1 LacI family DNA-binding transcriptional regulator -
  ACGHJ8_RS09290 (F300043A5_18200) - 1777415..1779184 (-) 1770 WP_390539962.1 beta-galactosidase family protein -
  ACGHJ8_RS09295 (F300043A5_18210) - 1779199..1780560 (-) 1362 WP_390539964.1 PTS sugar transporter subunit IIC -
  ACGHJ8_RS09300 (F300043A5_18220) rcrQ 1780817..1782640 (-) 1824 WP_390539966.1 ABC transporter ATP-binding protein Regulator
  ACGHJ8_RS09305 (F300043A5_18230) - 1782633..1784855 (-) 2223 WP_390539968.1 ABC transporter ATP-binding protein -
  ACGHJ8_RS09310 (F300043A5_18240) - 1784852..1785280 (-) 429 WP_390539970.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACGHJ8_RS09315 (F300043A5_18250) - 1785406..1786647 (-) 1242 WP_390539972.1 glutamate-5-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 67890.89 Da        Isoelectric Point: 5.5645

>NTDB_id=109198 ACGHJ8_RS09300 WP_390539966.1 1780817..1782640(-) (rcrQ) [Massilimicrobiota timonensis strain f30]
MPRGHMGGRQMSNEKAKDFKGTIQKLFAHLRPYYVKFIFIFIFAAGSTIFSIFGPKVLAQATDKLSEGIMAKVSHTGGID
FDAIFQILIFLVCIYLFSALLNYIQGFLTSGISQKVAYDFRKEISEKMDRLPLSYFDTHSSGDTLSRVTNDVDLIAQSLN
QSLTQVVTSSVTVIGILIMMLTISIPMTLLALCVLPISMFLMTKIMKRTQKYFISQQTSLGNVNGHIEEMYGAHQVVKAF
NGEEDSVARFEDYNDDLYNSAWKSQFFSGLMQPLTTFVGNIGYVGVCLLGGFLASGQMISIGDIQAFIQYVRQFNQPITQ
LAQIMNQLQSTAAAAERVFEFLDEPEMEEEHALVTSAQVHNMQGSVTFNHVQFGYTPEKTIIHDFSMHVHAGQSVAIVGP
TGAGKTTIVKLLMRFYELNSGHILIDGKDITQFARSDLRSLFGMVLQDTWLFGGTIRENLKYGKLDATDEEMYEACRLAY
ADHFINTLEDGYDTIINEESNNISQGQKQLLTIARAFLANPKILILDEATSSVDTRTEVLIQRGMDKLMEGRTSFIIAHR
LSTIKDANTIIVMKDGDIVELGNHESLLAKNGFYAELYQSQFESSHE

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=109198 ACGHJ8_RS09300 WP_390539966.1 1780817..1782640(-) (rcrQ) [Massilimicrobiota timonensis strain f30]
ATGCCTAGAGGACACATGGGTGGTAGACAGATGTCTAATGAAAAAGCTAAGGACTTTAAGGGAACGATTCAAAAATTATT
TGCACATTTACGTCCCTATTATGTGAAATTTATATTTATCTTTATATTTGCTGCAGGATCAACAATCTTTTCTATTTTTG
GACCGAAAGTATTGGCTCAGGCAACAGATAAATTAAGTGAAGGAATAATGGCTAAGGTTTCACATACAGGTGGTATTGAT
TTTGATGCAATCTTTCAAATTCTTATTTTCCTTGTCTGTATTTATTTGTTCAGTGCTTTATTAAATTATATTCAAGGATT
TTTAACTTCAGGTATATCTCAAAAAGTTGCTTATGATTTTAGAAAAGAAATTTCAGAAAAAATGGATCGTTTGCCATTGA
GTTATTTTGATACACATTCGAGTGGGGATACCTTATCACGTGTAACCAATGATGTTGATTTGATTGCGCAATCATTGAAT
CAGAGTTTAACACAGGTGGTGACATCTTCCGTTACAGTTATTGGTATTTTAATCATGATGCTGACAATCAGTATTCCAAT
GACATTATTAGCGCTATGTGTGTTACCTATTTCAATGTTTTTAATGACTAAAATCATGAAAAGAACACAAAAGTACTTTA
TTTCACAACAAACAAGTTTAGGAAATGTGAATGGTCACATTGAAGAAATGTATGGTGCTCATCAAGTGGTAAAAGCATTT
AATGGCGAAGAAGATTCGGTCGCACGTTTTGAAGACTATAATGATGATTTATATAACTCTGCATGGAAATCACAGTTCTT
TTCTGGCTTGATGCAACCACTTACAACATTTGTTGGAAATATTGGTTATGTGGGTGTATGTTTGTTAGGTGGATTTTTAG
CCAGTGGACAAATGATTTCGATTGGGGATATTCAGGCATTTATTCAATATGTGCGTCAATTTAACCAACCGATTACTCAA
CTTGCTCAAATTATGAATCAATTACAATCGACTGCAGCTGCTGCAGAACGTGTGTTTGAATTTTTAGATGAACCAGAGAT
GGAAGAAGAACATGCTTTGGTCACTAGTGCCCAAGTCCATAACATGCAAGGAAGTGTTACATTCAACCATGTTCAATTTG
GCTATACGCCAGAAAAAACAATCATTCACGACTTTTCTATGCATGTTCATGCTGGACAAAGTGTTGCAATTGTTGGACCA
ACAGGTGCGGGGAAAACAACGATTGTCAAATTGTTAATGCGTTTTTATGAATTGAATAGTGGGCATATCTTAATTGATGG
AAAAGATATTACACAATTTGCCAGAAGTGATTTAAGAAGTTTGTTTGGTATGGTTTTACAAGATACATGGTTATTTGGTG
GAACGATTCGTGAAAACTTAAAGTATGGAAAATTAGATGCAACAGATGAAGAAATGTATGAAGCCTGTCGATTGGCATAT
GCTGATCATTTTATTAATACTTTAGAAGATGGTTATGATACAATCATTAATGAAGAATCTAATAATATTTCACAGGGACA
AAAACAATTATTAACTATAGCCAGAGCTTTTCTTGCGAATCCTAAAATCTTGATTTTAGATGAAGCAACTTCATCTGTTG
ATACAAGAACAGAAGTATTGATACAAAGAGGTATGGATAAATTGATGGAAGGAAGAACAAGCTTTATTATTGCTCATCGA
CTTTCTACGATTAAGGATGCTAATACGATTATTGTCATGAAAGATGGCGATATTGTAGAATTAGGAAACCATGAGTCATT
ACTTGCAAAAAATGGATTCTATGCCGAATTGTATCAATCACAATTTGAATCAAGTCATGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(383-531)

ABC transporter transmembrane region (ABC_membrane)

(37-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50

97.529

0.488

Multiple sequence alignment