Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R3O62_RS07165 Genome accession   NZ_CP178829
Coordinates   1688913..1690280 (-) Length   455 a.a.
NCBI ID   WP_269110200.1    Uniprot ID   -
Organism   Bacteroides hominis strain Tbg-33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1683913..1695280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3O62_RS07150 (R3O62_007150) - 1686260..1686859 (-) 600 WP_032531771.1 response regulator transcription factor -
  R3O62_RS07155 (R3O62_007155) - 1686868..1688457 (-) 1590 WP_032531729.1 NAD(P)/FAD-dependent oxidoreductase -
  R3O62_RS07160 (R3O62_007160) - 1688499..1688873 (-) 375 WP_317472418.1 GxxExxY protein -
  R3O62_RS07165 (R3O62_007165) radA 1688913..1690280 (-) 1368 WP_269110200.1 DNA repair protein RadA Machinery gene
  R3O62_RS07170 (R3O62_007170) - 1691104..1691511 (+) 408 WP_005778632.1 BT0820 family HAD-type phosphatase -
  R3O62_RS07175 (R3O62_007175) - 1691606..1693906 (-) 2301 WP_317472417.1 GumC family protein -
  R3O62_RS07180 (R3O62_007180) - 1693925..1694878 (-) 954 WP_250710565.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50199.95 Da        Isoelectric Point: 6.1360

>NTDB_id=1091831 R3O62_RS07165 WP_269110200.1 1688913..1690280(-) (radA) [Bacteroides hominis strain Tbg-33]
MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKEVPNKRPVSGIESPKAKPVTLNEIEADEEPRIDMHDEELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVLQTVLHMPERRILYISGEESARQLKLRADRLTQTSSDCLIVCETSLEQIYVHI
KNTRPDLVIIDSIQTLSTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFILPKYNMQGIDMKKLKIELVPVRKVEEAFRGLFG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1091831 R3O62_RS07165 WP_269110200.1 1688913..1690280(-) (radA) [Bacteroides hominis strain Tbg-33]
ATGGCAAAAGAGAAAACCGTTTATGTATGCAGTAACTGCGGACAGGAATCACCCAAATGGGTGGGCAAGTGTCCTTCGTG
TGGCGAGTGGAATACTTATGTAGAAGAAATCGTACGCAAGGAGGTTCCGAATAAACGTCCGGTATCGGGCATCGAATCGC
CTAAAGCCAAACCTGTCACCCTGAACGAGATCGAAGCGGACGAGGAACCCCGCATCGACATGCACGACGAGGAGTTGAAC
CGGGTACTGGGCGGCGGACTGGTGCCAGGATCACTGGTGCTGATCGGTGGCGAACCGGGTATCGGAAAATCGACCCTGGT
ACTTCAAACCGTGCTCCACATGCCCGAACGCAGGATACTCTACATCTCCGGAGAAGAGAGTGCAAGGCAACTGAAGCTCC
GCGCAGACCGACTGACACAAACGTCGAGCGACTGCCTGATTGTGTGCGAAACGTCGTTGGAGCAGATCTATGTGCACATT
AAGAATACACGTCCGGACCTGGTAATCATCGACTCCATACAGACCCTGTCCACCGAAAGCATCGAGTCTTCGCCGGGAAG
TATCGCGCAAGTGCGGGAGTGCTCGGCCTCCATTCTCCGTTTTGCCAAAGAGACGCATACTCCGGTATTACTGATCGGGC
ATATCAACAAAGAAGGCAGCATTGCCGGTCCGAAGGTACTGGAACACATCGTAGACACCGTGCTCCAGTTTGAGGGGGAC
CAGCATTATATGTACCGCATCCTGCGCAGCATCAAGAACCGCTTTGGCAGTACGGCCGAACTGGGTATTTACGAGATGCG
GCAAGATGGTCTTCGCCAGGTCAGCAACCCATCGGAGCTGTTGCTGTCGCAAGATCACGAAGGCATGAGCGGGGTAGCCA
TCGCATCTGCCATCGAAGGAGTCAGGCCGTTCCTGATAGAAACACAGGCACTTGTCAGTTCTGCCGTTTACGGCAATCCG
CAACGTTCGGCAACCGGATTCGATATCCGCCGCATGAACATGCTGCTGGCTGTGCTTGAGAAACGTGTCGGCTTCAAGTT
AGCACAGAAAGATGTCTTTCTAAATATTGCCGGGGGGCTGAAGGTGAACGACCCTGCCATCGACCTGGCTGTTATCAGTG
CCATCCTTTCATCCAATATGGATGCCGCCATCGAACCGGAAGTCTGTATGGCAGGTGAAATCGGGTTGTCCGGTGAAATC
CGTCCGGTAAACCGAATCGAACAACGTATCGGTGAAGCCGAGAAGCTTGGATTCAAACGGTTTATCCTGCCTAAGTATAA
TATGCAGGGAATCGACATGAAGAAGCTGAAGATAGAACTGGTGCCGGTGAGAAAGGTGGAAGAGGCGTTCCGGGGACTCT
TCGGATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-219)

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.528

100

0.519
  radA Streptococcus pneumoniae Rx1

48.132

100

0.481
  radA Streptococcus pneumoniae D39

48.132

100

0.481
  radA Streptococcus pneumoniae R6

48.132

100

0.481
  radA Streptococcus pneumoniae TIGR4

48.132

100

0.481
  radA Streptococcus mitis NCTC 12261

48.132

100

0.481
  radA Streptococcus mitis SK321

47.912

100

0.479

Multiple sequence alignment