Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HW09_RS31235 Genome accession   NZ_CP008857
Coordinates   6795764..6796093 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain F30658     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6790764..6801093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW09_RS31220 - 6791564..6792520 (+) 957 WP_003104579.1 UDP-glucose 4-epimerase family protein -
  HW09_RS31225 (HW09_31545) - 6792522..6793541 (+) 1020 WP_003158833.1 MraY family glycosyltransferase -
  HW09_RS31230 (HW09_31550) - 6793576..6795573 (+) 1998 WP_031757889.1 polysaccharide biosynthesis protein -
  HW09_RS31235 (HW09_31555) comEA/comE1 6795764..6796093 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  HW09_RS31245 (HW09_31565) - 6796310..6797506 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  HW09_RS31250 (HW09_31570) uvrB 6797694..6799706 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=109166 HW09_RS31235 WP_003104586.1 6795764..6796093(+) (comEA/comE1) [Pseudomonas aeruginosa strain F30658]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=109166 HW09_RS31235 WP_003104586.1 6795764..6796093(+) (comEA/comE1) [Pseudomonas aeruginosa strain F30658]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment