Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACL7B1_RS02320 Genome accession   NZ_CP178802
Coordinates   465078..466499 (+) Length   473 a.a.
NCBI ID   WP_010929641.1    Uniprot ID   -
Organism   Bordetella pertussis strain YW05     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 460078..471499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL7B1_RS02305 (ACL7B1_02305) - 460931..462184 (+) 1254 WP_010929638.1 amidase -
  ACL7B1_RS02310 (ACL7B1_02310) leuA 462275..463977 (-) 1703 Protein_453 2-isopropylmalate synthase -
  ACL7B1_RS02315 (ACL7B1_02315) - 464410..465057 (-) 648 WP_010929640.1 hypothetical protein -
  ACL7B1_RS02320 (ACL7B1_02320) rpoN/rpoN1 465078..466499 (+) 1422 WP_010929641.1 RNA polymerase factor sigma-54 Machinery gene
  ACL7B1_RS02325 (ACL7B1_02325) - 466592..466894 (+) 303 WP_003815905.1 bacterioferritin-associated ferredoxin -
  ACL7B1_RS02330 (ACL7B1_02330) - 466922..467800 (-) 879 WP_010929512.1 LysR substrate-binding domain-containing protein -
  ACL7B1_RS02335 (ACL7B1_02335) - 467908..468836 (+) 929 Protein_458 DMT family transporter -
  ACL7B1_RS02340 (ACL7B1_02340) - 469067..470017 (-) 951 WP_005012067.1 IS481-like element IS481 family transposase -
  ACL7B1_RS02345 (ACL7B1_02345) - 470113..470388 (+) 276 Protein_460 porin -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 51670.74 Da        Isoelectric Point: 4.8131

>NTDB_id=1091635 ACL7B1_RS02320 WP_010929641.1 465078..466499(+) (rpoN/rpoN1) [Bordetella pertussis strain YW05]
MTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAELSQALAENPLLERDEDPAREEQADPEREASVEADEAPDTELRL
DEMPGSGGVLPDDDSDLPQAARPDTLREHLLGQLALTRAAPRDAALCGLLIDELDENGYLDSPLEEILTWLPAEVQADLD
ELRAALALLQSFDPAGIGARDMAECLQLQLRQPDPARLPEAADAEVLACARRICAQHLPLLATGNVARVREAVQCDEAVV
RAAHALIPRLEPRPGRAWTVPAADYAIPDVIVRRTRQGWQAVLNSAVVPRLHVNAVYAQVLGGQRQGGNAGLQAQLQQAR
WMIRNVEQRFDTILRVAQAIVAHQQAFFTQGPAAMRPLILKDIAGELDLHESTISRATTQKYMLTPFGTLELKRFFGAGV
STDGGDATSATAVQAVIRQMVADEDRAKPLSDSQIMQRLADQGIVIARRTVAKYREALRIAPATLRKAHAAGR

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1091635 ACL7B1_RS02320 WP_010929641.1 465078..466499(+) (rpoN/rpoN1) [Bordetella pertussis strain YW05]
ATGACTCGTCCCGCGCTAGAACTTCGTCCTGGTCAACATTTGACGTTGACCCCTCAACTGCAACAGTCGATCCGGCTGTT
GCAGCTGTCGTCGCTGGAGCTGGAGGCCGAACTGTCGCAGGCGCTGGCCGAGAATCCGTTGCTGGAACGCGACGAAGATC
CGGCGCGCGAGGAGCAGGCCGACCCCGAGCGCGAGGCCTCGGTCGAGGCCGACGAGGCGCCGGATACCGAACTGCGCCTG
GACGAGATGCCCGGTTCGGGCGGCGTTCTTCCCGACGACGACAGCGACCTGCCGCAGGCGGCGCGCCCGGATACCCTGCG
CGAACACCTGCTGGGGCAGCTGGCGCTGACGCGCGCCGCGCCGCGCGATGCGGCGCTGTGCGGTCTGCTGATCGACGAAC
TGGACGAGAACGGCTACCTGGATTCGCCCCTGGAAGAGATCCTGACCTGGCTGCCGGCCGAGGTGCAGGCCGACCTGGAC
GAGCTGCGCGCGGCGCTGGCATTGCTGCAGTCGTTCGATCCGGCAGGCATCGGCGCGCGCGACATGGCCGAATGCCTGCA
GCTGCAGTTGCGCCAGCCCGATCCGGCGCGCCTGCCCGAGGCGGCCGATGCCGAGGTGCTGGCCTGTGCGCGGCGCATCT
GCGCGCAGCATCTGCCCTTGCTGGCCACCGGCAACGTGGCCCGCGTGCGCGAGGCCGTGCAATGCGACGAGGCGGTCGTG
CGCGCCGCGCATGCGCTGATCCCGCGCCTGGAACCGCGGCCGGGCCGCGCCTGGACGGTGCCGGCGGCCGATTACGCCAT
TCCCGACGTGATCGTGCGCCGTACCCGCCAGGGCTGGCAGGCGGTGCTCAACAGCGCCGTCGTGCCGCGGCTGCATGTCA
ATGCCGTCTATGCGCAAGTGCTGGGCGGCCAGCGCCAGGGCGGCAACGCCGGCCTGCAGGCGCAGCTGCAACAGGCGCGC
TGGATGATACGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCGCAGGCGATCGTGGCGCATCAGCAGGCGTT
CTTCACCCAGGGGCCGGCGGCCATGCGGCCGCTGATCCTCAAGGACATCGCCGGCGAACTGGATCTGCACGAATCGACCA
TTTCGCGCGCGACGACGCAGAAGTACATGCTCACACCGTTCGGTACGCTGGAGCTCAAGCGCTTCTTTGGCGCGGGCGTG
TCCACCGATGGCGGAGACGCCACCTCGGCCACCGCGGTGCAGGCGGTGATCCGCCAGATGGTGGCCGACGAGGATCGCGC
CAAGCCCTTGTCGGACAGCCAGATCATGCAGCGCCTGGCCGACCAGGGCATCGTCATTGCCCGCCGCACGGTGGCCAAGT
ACCGCGAGGCGCTGCGGATTGCGCCAGCGACGCTGCGCAAGGCCCACGCCGCGGGTCGTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(100-297)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(6-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(312-467)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.419

100

0.518

Multiple sequence alignment