Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABVF92_RS19070 Genome accession   NZ_CP178759
Coordinates   3926309..3926905 (-) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae subsp. similipneumoniae strain A3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3921309..3931905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVF92_RS19055 (ABVF92_19055) helD 3921520..3923574 (-) 2055 WP_413622676.1 DNA helicase IV -
  ABVF92_RS19060 (ABVF92_19060) - 3923699..3924145 (+) 447 WP_004201437.1 YccF domain-containing protein -
  ABVF92_RS19065 (ABVF92_19065) yccS 3924163..3926298 (+) 2136 WP_259116565.1 YccS family putative transporter -
  ABVF92_RS19070 (ABVF92_19070) sxy/tfoX 3926309..3926905 (-) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  ABVF92_RS19075 (ABVF92_19075) - 3926923..3927228 (-) 306 WP_153650437.1 hypothetical protein -
  ABVF92_RS19080 (ABVF92_19080) sulA 3927254..3927763 (+) 510 WP_413622678.1 SOS-induced cell division inhibitor SulA -
  ABVF92_RS19085 (ABVF92_19085) ompA 3928116..3929186 (+) 1071 WP_002898408.1 porin OmpA -
  ABVF92_RS19090 (ABVF92_19090) matP 3929376..3929828 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ABVF92_RS19095 (ABVF92_19095) - 3930014..3931771 (+) 1758 WP_179416459.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=1091370 ABVF92_RS19070 WP_004201433.1 3926309..3926905(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. similipneumoniae strain A3]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1091370 ABVF92_RS19070 WP_004201433.1 3926309..3926905(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. similipneumoniae strain A3]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGTTGCGCCGACATGGGCGCATCGTGCCGCTGAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGATGTGTTAGCGCTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCACGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5

Multiple sequence alignment