Detailed information NTG0109098

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: HW09_RS12770
• Genome accession: NZ_CP008857
• Coordinates: 2782124..2784973 (+)
• Length: 949 a.a.
• NCBI ID: WP_016852013.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F30658
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2777124..2789973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HW09_RS12745 (HW09_12885)	-	2777308..2777526 (-)	219	WP_023084999.1	AlpA family transcriptional regulator	-
HW09_RS12750 (HW09_12890)	-	2777668..2778426 (-)	759	WP_003454930.1	hypothetical protein	-
HW09_RS12755 (HW09_12895)	-	2778966..2779874 (-)	909	WP_012761385.1	LysR family transcriptional regulator	-
HW09_RS36140	-	2780014..2780443 (+)	430	Protein_2586	IS66 family transposase	-
HW09_RS36465	-	2780565..2780798 (-)	234	Protein_2587	IS110 family transposase	-
HW09_RS34185	-	2781143..2781415 (+)	273	Protein_2588	helix-turn-helix domain-containing protein	-
HW09_RS12765 (HW09_12915)	-	2781460..2782029 (+)	570	WP_016852012.1	Hsp20/alpha crystallin family protein	-
HW09_RS12770 (HW09_12920)	clpC	2782124..2784973 (+)	2850	WP_016852013.1	heat shock survival AAA family ATPase ClpK	Regulator
HW09_RS12775 (HW09_12925)	cls	2784990..2786420 (+)	1431	WP_023084997.1	cardiolipin synthase	-
HW09_RS12780 (HW09_12930)	ftsH	2786448..2788265 (+)	1818	WP_033949142.1	ATP-dependent zinc metalloprotease FtsH	-
HW09_RS12785 (HW09_12935)	hsp20-GI	2788353..2788811 (+)	459	WP_019485494.1	small heat shock protein sHSP20-GI	-
HW09_RS12790 (HW09_12940)	yfdX1	2788834..2789748 (+)	915	WP_019485495.1	heat resistance protein YfdX1	-

Sequence

Protein

• Length: 949 a.a.
• Molecular weight: 104310.14 Da
• Isoelectric Point: 5.8094

>NTDB_id=109098 HW09_RS12770 WP_016852013.1 2782124..2784973(+) (clpC) [Pseudomonas aeruginosa strain F30658]
MARKQCQVCGQSATVRVEANLNGRHSTMLLCDDHYRQLARQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDAPSVAA
DADEVVDASFGESAPATAGTARRRGSGLASRISEQSEALLQEAARHAAEFGRAEVDTEHLLLALSDSDVVKTILGQFKIK
VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTVAQTMMILRGLRDTFEAHHKVSITEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYVASRKQYDKAAELGKRIEAKETELKK
LVEEWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGG
KPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKARGAAGEEYEKTKSEVMDVLRGHFR
PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKADHASARWDDKAERVVFERQEPAAQPAEPEKPDAANVAEAPPNGESKPARKKKSAGGGS

Nucleotide

• Length: 2850 bp

>NTDB_id=109098 HW09_RS12770 WP_016852013.1 2782124..2784973(+) (clpC) [Pseudomonas aeruginosa strain F30658]
ATGGCCAGAAAACAATGCCAAGTCTGCGGCCAGTCCGCCACGGTGCGGGTGGAAGCCAATCTCAATGGTCGCCACAGCAC
CATGCTGTTGTGTGACGATCACTATCGCCAACTGGCGCGCCAGCAAAAGCGCACCGTCTCGCCGCTGGAGGCTCTGTTTG
GCTCGCGCAGCGGTTTGTTCGAAGACTTCCTCGGCAGCGACTTCTTCCGCATCGGTGACGATGCACCGTCCGTGGCGGCT
GATGCCGACGAAGTGGTCGATGCGTCTTTCGGCGAATCCGCTCCCGCAACGGCGGGCACGGCGCGCCGCCGCGGCAGTGG
GCTGGCCAGCCGTATCAGCGAACAGTCCGAGGCCCTATTGCAGGAGGCCGCCCGACACGCTGCAGAGTTCGGGCGCGCCG
AAGTCGATACCGAACACCTGCTGCTGGCGCTATCCGACAGCGACGTGGTCAAGACCATCCTGGGGCAGTTCAAGATCAAG
GTCGATGACCTCAAGCGCCAGATCGAATCCGAAGCCAAGCGCGGCGATAAGCCGTTCGAGGGCGAGATCGGCGTGTCGCC
CCGGGTCAAGGACGCGCTCAGCCGTGCTTTCGTGGCCTCCAACGAACTCGGCCACTCTTATGTCGGGCCGGAGCATTTCC
TGATCGGGCTCGCCGAGGAAGGCGAAGGTTTGGCGGCCAACCTGCTGCGCCGTTACGGCCTCACGCCGCAAGCGCTGCGC
CAGCAGGTAAGCAAGGTGGTCGGCAAAGGGGCCGAGGATGGCCGCGCCGAGACGCCGACCAACACGCCGGAACTCGACAA
GTATTCGCGCGACCTCACCAAGATGGCGCGCGAGGGCAAGCTCGATCCGGTCATCGGCCGCGCGCAGGAGATCGAGACGA
CCATCGAAGTGCTGGCCCGGCGCAAGAAGAACAACCCGGTGCTGATCGGCGAGCCCGGCGTCGGCAAGACCGCCATCGTC
GAAGGGCTGGCGCAGCGCATGGTCGCCGGCGAAGTGCCCGAGACGCTGCGCGACAAGCGCCTGGTGGAACTCAACATCAA
TGCCATGGTGGCCGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTCAAGGAAGTGACCGAGCACC
AGGGCGAGCTGATTCTCTTCATCGACGAAGTGCACACCATCGTCGGTGCAGGCCAGGGTGGCGGCGAAGGCGGGCTGGAC
GTGGCCAACGTGTTCAAGCCGATGATGGCGCGCGGCGAACTGAACCTGATCGGCGCCACCACGCTCAACGAGTATCAGAA
GTACATCGAGAAGGACGCCGCGCTGGAGCGTCGCTTCCAGCCGGTGATGGTGCCCGAGCCGACGGTAGCGCAGACCATGA
TGATCCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCACCGAGGATGCGATCATCGCCGCCGCC
GAGTTGTCGGACCGCTACATCACCGCGCGCTTTTTGCCTGACAAGGCCATCGACCTGCTCGACCAGGCGGCCGCACGCGT
GAAGCTGTCGGCCACGGCCCGCCCGGTGGCGGTGCAAGAGCTGGAGTCCGAACTGCACCAGCTGCGGCGTGAGCAAGACT
ATGTGGCTTCGCGCAAGCAGTACGACAAGGCCGCCGAGCTGGGCAAGCGCATCGAGGCCAAGGAGACTGAACTCAAGAAG
CTCGTCGAGGAATGGGAACGCGAGCGCGCCTCGGGCAGCGCCGAAGTCAAGGCCGAGCATGTCGCGCAGATCGTCTCGCG
CCTGACCGGCATTCCGGTCAACGAGCTGACGGTGGAAGAACGCGAGAAGCTGCTGCATCTGGAGCAGCGGCTGCACGAGC
GCCTGGTGGGCCAGGACGAAGCAGTACGTGCCGTGGCCGATGCCGTGCGGCTGTCGCGCGCGGGCCTGCGCGAAGGCGGC
AAGCCAGTGGCCACCTTCCTGTTCCTCGGGCCGACGGGTGTGGGCAAGACCGAACTCGCCAAGGCACTGGCCGAGTCCAT
CTATGGCGATGAGGGCGCGCTGCTGCGCATCGACATGTCCGAGTACGGTGAACGCCATACCGTGGCACGCCTGGTGGGCG
CGCCTCCGGGTTATGTGGGCTATGACGAGGGCGGCCAGCTCACCGAGAAGGTGCGTCGCAAACCCTACAGCGTGTTGTTG
CTCGATGAGATCGAAAAAGCGCACCCCGACGTCTACAACATCCTGCTGCAGGTATTCGACGACGGGCGGCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAATACCATCATCATCGCCACCTCGAACTTGGGCTCGGACATCATCCAGCGTCGGC
TGAAGGCCCGTGGCGCCGCCGGCGAGGAATACGAGAAGACCAAGTCCGAGGTGATGGACGTGCTGCGCGGACACTTCCGC
CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGCAAGGAGGAGATCCGCCATATCGTCGGCCT
GCAGCTCGATCGTGTGGCCCGCAACGCCGCCAGCCAGGGCGTGACGTTGACCTTCGACCAGACCTTGATCGACCACTTCG
CGGAGGAAGGCTACAAACCCGAGTTCGGCGCGCGCGAGCTCAAGCGGCTGATCCGCAGCGAGCTGGAAACCGCGCTGGCA
CGCGAGATGCTCGGTGGTGGCATCGGCAAGGCCGATCACGCCAGCGCCCGCTGGGATGACAAGGCCGAACGGGTGGTCTT
CGAGCGCCAGGAGCCAGCCGCGCAGCCGGCCGAGCCTGAAAAGCCCGATGCAGCGAACGTGGCCGAGGCACCGCCGAACG
GCGAGAGCAAGCCTGCGCGCAAGAAGAAGTCAGCGGGCGGCGGATCTTGA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (199-248)

• ATPase family associated with various cellular activities (AAA) (AAA) (307-440)

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

• AAA lid domain (AAA_lid_9) (449-547)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	50.818	83.772	0.426
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.59	86.301	0.376
clpC	Streptococcus thermophilus LMD-9	41.99	86.828	0.365
clpC	Streptococcus thermophilus LMG 18311	41.9	86.512	0.362
clpC	Streptococcus mutans UA159	42.086	85.88	0.361
clpC	Streptococcus pneumoniae Rx1	42.118	85.564	0.36
clpC	Streptococcus pneumoniae D39	42.118	85.564	0.36