Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACL6ER_RS21110 Genome accession   NZ_CP178717
Coordinates   4182902..4184278 (+) Length   458 a.a.
NCBI ID   WP_003242044.1    Uniprot ID   A0A9W5LEJ7
Organism   Bacillus inaquosorum strain SY1167     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4177902..4189278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS21090 (ACL6ER_21090) ctsR 4178256..4178720 (+) 465 WP_003242054.1 transcriptional regulator CtsR -
  ACL6ER_RS21095 (ACL6ER_21095) mcsA 4178734..4179291 (+) 558 WP_032732366.1 protein-arginine kinase activator protein McsA -
  ACL6ER_RS21100 (ACL6ER_21100) - 4179291..4180382 (+) 1092 WP_268332623.1 protein arginine kinase -
  ACL6ER_RS21105 (ACL6ER_21105) clpC 4180379..4182811 (+) 2433 WP_268332624.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  ACL6ER_RS21110 (ACL6ER_21110) radA 4182902..4184278 (+) 1377 WP_003242044.1 DNA repair protein RadA Machinery gene
  ACL6ER_RS21115 (ACL6ER_21115) disA 4184282..4185364 (+) 1083 WP_003242042.1 DNA integrity scanning diadenylate cyclase DisA -
  ACL6ER_RS21120 (ACL6ER_21120) - 4185479..4186579 (+) 1101 WP_003242040.1 PIN/TRAM domain-containing protein -
  ACL6ER_RS21125 (ACL6ER_21125) ispD 4186594..4187292 (+) 699 WP_019257274.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACL6ER_RS21130 (ACL6ER_21130) ispF 4187285..4187761 (+) 477 WP_003225745.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49496.97 Da        Isoelectric Point: 7.9805

>NTDB_id=1090887 ACL6ER_RS21110 WP_003242044.1 4182902..4184278(+) (radA) [Bacillus inaquosorum strain SY1167]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSDSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIQEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEALRTSLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1090887 ACL6ER_RS21110 WP_003242044.1 4182902..4184278(+) (radA) [Bacillus inaquosorum strain SY1167]
ATGGCTAAAACAAAATCGAAATTCATCTGCCAATCCTGCGGCTACGAGTCTCCAAAATGGATGGGGAAATGTCCGGGATG
CGGTGCTTGGAATACAATGGTGGAAGAAATGATTAAAAAAGCACCGGCCAATCGGAGAGCGGCTTTTTCTCATTCTGTTC
AAACCGTACAGAAACCTTCACCTATTACATCAATCGAAACATCAGAAGAACCCCGGGTTAAAACCCAGCTTGGCGAATTT
AACAGAGTGCTCGGAGGGGGCGTCGTTAAAGGTTCACTCGTTCTAATCGGCGGGGATCCCGGTATCGGAAAGTCAACGTT
ATTACTGCAGGTTTCCGCTCAATTATCAGATTCATCGAACAGTGTGCTGTACATTTCGGGAGAAGAATCGGTCAAACAAA
CGAAACTGAGAGCAGACCGTCTCGGCATAAATAATCCGTCGCTGCATGTTTTATCTGAAACCGATATGGAGTATATTTCG
TCTGCTATACAAGAGATGAATCCAGCGTTTGTCGTTGTTGACTCTATTCAAACGGTTTACCAAAGCGATATCACATCAGC
TCCCGGCAGTGTGTCACAGGTCAGGGAATGTACGGCTGAGCTGATGAAAATTGCAAAAACAAAAGGCATTCCGATTTTTA
TCGTAGGGCACGTGACGAAAGAAGGGTCCATCGCGGGGCCGAGACTGCTGGAGCATATGGTTGACACTGTTTTATATTTT
GAAGGAGAACGTCACCATACTTTCCGTATTTTGCGGGCTGTAAAAAACCGTTTTGGATCTACAAACGAAATGGGCATTTT
CGAAATGCGCGAAGAGGGGCTCACTGAGGTTTTGAATCCTTCAGAAATTTTCTTAGAAGAACGCTCGGCGGGATCCGCAG
GCTCGAGCATAACTGCTTCTATGGAAGGCACAAGGCCGATTCTCGTTGAAATCCAGGCGCTCATCTCGCCAACAAGCTTT
GGCAATCCGCGGCGTATGGCAACGGGAATAGACCATAACAGGGTTTCACTGTTAATGGCTGTGTTAGAAAAAAGAGTTGG
GCTGCTGCTGCAAAATCAGGATGCTTATTTGAAAGTGGCCGGCGGCGTTAAGCTTGATGAACCGGCAATTGATCTTGCCA
TTGCGATCAGTATTGCGTCAAGCTTTAGAGACACACCTCCAAATCCTGCAGATTGTTTTATAGGAGAAGTGGGATTAACC
GGAGAAGTCCGGCGGGTTTCAAGAATTGAACAGCGTGTGAAAGAAGCGGCTAAGCTTGGTTTTAAACGCATGATCATACC
CGCGGCAAATCTGGATGGATGGACAAAACCAAAAGGGATTGAGGTTATCGGAGTAGCAAATGTTGCAGAGGCGCTTCGTA
CTTCATTAGGAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

99.345

100

0.993
  radA Streptococcus pneumoniae Rx1

63.355

98.908

0.627
  radA Streptococcus pneumoniae D39

63.355

98.908

0.627
  radA Streptococcus pneumoniae R6

63.355

98.908

0.627
  radA Streptococcus pneumoniae TIGR4

63.355

98.908

0.627
  radA Streptococcus mitis NCTC 12261

63.355

98.908

0.627
  radA Streptococcus mitis SK321

63.135

98.908

0.624

Multiple sequence alignment