Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACL6ER_RS11970 Genome accession   NZ_CP178717
Coordinates   2431497..2432264 (-) Length   255 a.a.
NCBI ID   WP_268291799.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SY1167     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2426497..2437264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS11950 (ACL6ER_11950) - 2426670..2427482 (-) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -
  ACL6ER_RS11955 (ACL6ER_11955) ccpN 2427508..2428146 (-) 639 WP_268314872.1 transcriptional regulator CcpN -
  ACL6ER_RS11960 (ACL6ER_11960) glyS 2428280..2430319 (-) 2040 WP_268332602.1 glycine--tRNA ligase subunit beta -
  ACL6ER_RS11965 (ACL6ER_11965) glyQ 2430312..2431199 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ACL6ER_RS11970 (ACL6ER_11970) recO 2431497..2432264 (-) 768 WP_268291799.1 DNA repair protein RecO Machinery gene
  ACL6ER_RS11975 (ACL6ER_11975) - 2432301..2432444 (-) 144 WP_003230053.1 YqzL family protein -
  ACL6ER_RS11980 (ACL6ER_11980) era 2432588..2433493 (-) 906 WP_003226207.1 GTPase Era -
  ACL6ER_RS11985 (ACL6ER_11985) - 2433474..2433884 (-) 411 WP_003237067.1 cytidine deaminase -
  ACL6ER_RS11990 (ACL6ER_11990) - 2434005..2434376 (-) 372 WP_268278478.1 diacylglycerol kinase family protein -
  ACL6ER_RS11995 (ACL6ER_11995) ybeY 2434357..2434830 (-) 474 WP_268278477.1 rRNA maturation RNase YbeY -
  ACL6ER_RS12000 (ACL6ER_12000) pgpH 2434831..2436966 (-) 2136 WP_080010837.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29372.16 Da        Isoelectric Point: 8.5618

>NTDB_id=1090855 ACL6ER_RS11970 WP_268291799.1 2431497..2432264(-) (recO) [Bacillus inaquosorum strain SY1167]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPFLFEFILESFKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGIVSLKQETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1090855 ACL6ER_RS11970 WP_268291799.1 2431497..2432264(-) (recO) [Bacillus inaquosorum strain SY1167]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAACGATTACGGAGAGACGAATAAAATCGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCAAGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAAAAAACAACGGGCCTCGGAACGCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCGTATATTGCTGAGCTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTTCTTGTTTGAATTCATTTTAGAATCGTTTAAACAGCTGAATGAAGGAACAGATCCGGATGTCATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGGCTGTATCCCGAGCTGAATCACTGTGTGCATTGTAAAAGCCAGGACGGG
ACATTTCATTTCTCTGTCCGTGATAACGGGTTTATTTGCCATCGCTGTTTTGAAAAAGATCCTTACAGGATTCCGATTAA
ACCGCAAACGGCAAGGCTGTTGAGGCTGTTTTATTACTTCGATCTGTCGAGGCTGGGCATTGTGTCCTTAAAACAGGAAA
CAAAAGCTGAATTGAAGCAAGTGATTGATTTATATTATGAGGAATATTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

97.647

100

0.976

Multiple sequence alignment