Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACL6ER_RS10440 Genome accession   NZ_CP178717
Coordinates   2163933..2164553 (+) Length   206 a.a.
NCBI ID   WP_004398007.1    Uniprot ID   A0A9W5LEN4
Organism   Bacillus inaquosorum strain SY1167     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2158933..2169553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS10400 (ACL6ER_10400) - 2160074..2160580 (-) 507 WP_029316845.1 PTS glucose transporter subunit IIA -
  ACL6ER_RS10405 (ACL6ER_10405) - 2160718..2161137 (+) 420 WP_004398001.1 Hsp20/alpha crystallin family protein -
  ACL6ER_RS10410 (ACL6ER_10410) - 2161158..2161526 (-) 369 WP_268272834.1 YppG family protein -
  ACL6ER_RS10415 (ACL6ER_10415) - 2161713..2161901 (+) 189 WP_003225611.1 YppF family protein -
  ACL6ER_RS10420 (ACL6ER_10420) - 2161940..2162311 (-) 372 WP_060398888.1 YppE family protein -
  ACL6ER_RS10425 (ACL6ER_10425) - 2162357..2162602 (-) 246 WP_004398004.1 DUF5446 family protein -
  ACL6ER_RS10430 (ACL6ER_10430) sspM 2162801..2162905 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ACL6ER_RS10435 (ACL6ER_10435) - 2162930..2163892 (-) 963 WP_033878805.1 DUF2515 domain-containing protein -
  ACL6ER_RS10440 (ACL6ER_10440) recU 2163933..2164553 (+) 621 WP_004398007.1 Holliday junction resolvase RecU Machinery gene
  ACL6ER_RS10445 (ACL6ER_10445) - 2164575..2167325 (+) 2751 WP_413324631.1 PBP1A family penicillin-binding protein -
  ACL6ER_RS10450 (ACL6ER_10450) - 2167398..2167892 (-) 495 WP_004398011.1 YpoC family protein -
  ACL6ER_RS10455 (ACL6ER_10455) nth 2167889..2168548 (-) 660 WP_413324633.1 endonuclease III -
  ACL6ER_RS10460 (ACL6ER_10460) dnaD 2168567..2169265 (-) 699 WP_004398016.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1090843 ACL6ER_RS10440 WP_004398007.1 2163933..2164553(+) (recU) [Bacillus inaquosorum strain SY1167]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1090843 ACL6ER_RS10440 WP_004398007.1 2163933..2164553(+) (recU) [Bacillus inaquosorum strain SY1167]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTCA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCCGCAGTAATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGATTATAACGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTCTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGTAAAGATGAGTTAGAGGAAGCGGCGTATCCGATTTCTCTTGGATACGCACCTAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.029

100

0.99

Multiple sequence alignment