Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACL6ER_RS06905 Genome accession   NZ_CP178717
Coordinates   1388115..1388393 (+) Length   92 a.a.
NCBI ID   WP_003238863.1    Uniprot ID   A0A9Q4EYY4
Organism   Bacillus inaquosorum strain SY1167     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1383115..1393393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS06885 (ACL6ER_06885) - 1384303..1385217 (+) 915 WP_268331562.1 ketopantoate reductase family protein -
  ACL6ER_RS06890 (ACL6ER_06890) - 1385246..1386478 (-) 1233 WP_268272353.1 aminopeptidase -
  ACL6ER_RS06895 (ACL6ER_06895) - 1386590..1386724 (-) 135 WP_003238865.1 protein YkpC -
  ACL6ER_RS06900 (ACL6ER_06900) mreBH 1386825..1387832 (-) 1008 WP_029316824.1 cell shape-determining protein MreBH -
  ACL6ER_RS06905 (ACL6ER_06905) abrB 1388115..1388393 (+) 279 WP_003238863.1 transcriptional regulator AbhA Regulator
  ACL6ER_RS06910 (ACL6ER_06910) kinC 1388586..1389872 (+) 1287 WP_268272352.1 two-component sensor histidine kinase KinC -
  ACL6ER_RS06915 (ACL6ER_06915) - 1389888..1390715 (+) 828 WP_268331560.1 gamma-glutamylcyclotransferase -
  ACL6ER_RS06920 (ACL6ER_06920) ktrC 1390787..1391452 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  ACL6ER_RS06925 (ACL6ER_06925) ade 1391610..1393343 (+) 1734 WP_268279095.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10242.04 Da        Isoelectric Point: 5.8742

>NTDB_id=1090837 ACL6ER_RS06905 WP_003238863.1 1388115..1388393(+) (abrB) [Bacillus inaquosorum strain SY1167]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSDNKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1090837 ACL6ER_RS06905 WP_003238863.1 1388115..1388393(+) (abrB) [Bacillus inaquosorum strain SY1167]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAATTAAGACGGGCACTGGA
TATTGCCATAAAAGACAGTATTGAATTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGTGTTT
GTTTAATGACCGGAGAAATCACTTCAGATAATAAAGAATACGGCAACGGTAAAATTACGTTAAGCCCAGAAGGTGCACAG
CTGCTTCTTGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

59.341

98.913

0.587

Multiple sequence alignment