Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACL6ER_RS04795 Genome accession   NZ_CP178717
Coordinates   1000053..1000631 (+) Length   192 a.a.
NCBI ID   WP_003239439.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SY1167     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 995053..1005631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS04770 (ACL6ER_04770) - 995564..996079 (-) 516 WP_373695039.1 methyl-accepting chemotaxis protein -
  ACL6ER_RS04775 (ACL6ER_04775) - 996320..996988 (-) 669 Protein_915 protoglobin domain-containing protein -
  ACL6ER_RS04780 (ACL6ER_04780) - 997002..998531 (-) 1530 WP_268279909.1 FAD-dependent oxidoreductase -
  ACL6ER_RS04785 (ACL6ER_04785) - 998643..999500 (+) 858 WP_003239442.1 SDR family oxidoreductase -
  ACL6ER_RS04790 (ACL6ER_04790) - 999527..999760 (-) 234 WP_003239440.1 IDEAL domain-containing protein -
  ACL6ER_RS04795 (ACL6ER_04795) comK 1000053..1000631 (+) 579 WP_003239439.1 competence transcription factor ComK Regulator
  ACL6ER_RS04800 (ACL6ER_04800) - 1000677..1001576 (-) 900 WP_268273077.1 SDR family oxidoreductase -
  ACL6ER_RS04805 (ACL6ER_04805) - 1001783..1002052 (+) 270 WP_032732146.1 excalibur calcium-binding domain-containing protein -
  ACL6ER_RS04810 (ACL6ER_04810) - 1002095..1003564 (-) 1470 WP_003239433.1 sodium:solute symporter family protein -
  ACL6ER_RS04815 (ACL6ER_04815) - 1003561..1003761 (-) 201 WP_019257983.1 DUF3311 domain-containing protein -
  ACL6ER_RS04820 (ACL6ER_04820) - 1003979..1004341 (-) 363 WP_268279907.1 hypothetical protein -
  ACL6ER_RS04825 (ACL6ER_04825) - 1004495..1005118 (+) 624 WP_003239430.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22442.72 Da        Isoelectric Point: 7.7153

>NTDB_id=1090823 ACL6ER_RS04795 WP_003239439.1 1000053..1000631(+) (comK) [Bacillus inaquosorum strain SY1167]
MSQKTDAPLESYEVNGATIAVLPEEIDGKIYSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1090823 ACL6ER_RS04795 WP_003239439.1 1000053..1000631(+) (comK) [Bacillus inaquosorum strain SY1167]
ATGAGTCAGAAAACTGACGCACCTTTAGAATCGTATGAAGTAAACGGCGCAACAATTGCTGTGCTGCCAGAAGAAATCGA
CGGCAAAATCTATTCCAAAATTATTGAAAAAGACTGCGTGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGGTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCTCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAACGGCAAAACGATGGAGCTGC
CGATCTCCTGCAATTCGTTCGAAAACCAGGTTTACCGGACAGCATGGCTCAGAACCAAATTCCAGGACAGAATCGAACAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

97.396

100

0.974

Multiple sequence alignment