Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACL6EQ_RS15470 Genome accession   NZ_CP178716
Coordinates   2977313..2977957 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SY1483     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2972313..2982957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS15435 (ACL6EQ_15435) mrpB 2973505..2973936 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ACL6EQ_RS15440 (ACL6EQ_15440) mrpC 2973936..2974277 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ACL6EQ_RS15445 (ACL6EQ_15445) mrpD 2974270..2975751 (+) 1482 WP_413358888.1 Na+/H+ antiporter subunit D -
  ACL6EQ_RS15450 (ACL6EQ_15450) mrpE 2975757..2976233 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  ACL6EQ_RS15455 (ACL6EQ_15455) mrpF 2976233..2976517 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ACL6EQ_RS15460 (ACL6EQ_15460) mnhG 2976501..2976875 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  ACL6EQ_RS15465 (ACL6EQ_15465) yuxO 2976914..2977294 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  ACL6EQ_RS15470 (ACL6EQ_15470) comA 2977313..2977957 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ACL6EQ_RS15475 (ACL6EQ_15475) comP 2978038..2980350 (-) 2313 WP_099085219.1 histidine kinase Regulator
  ACL6EQ_RS15480 (ACL6EQ_15480) comX 2980366..2980587 (-) 222 WP_014114983.1 competence pheromone ComX -
  ACL6EQ_RS15485 (ACL6EQ_15485) - 2980584..2981453 (-) 870 WP_015714626.1 polyprenyl synthetase family protein -
  ACL6EQ_RS15490 (ACL6EQ_15490) degQ 2981638..2981778 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ACL6EQ_RS15495 (ACL6EQ_15495) - 2982000..2982062 (+) 63 Protein_3012 hypothetical protein -
  ACL6EQ_RS15500 (ACL6EQ_15500) - 2982240..2982608 (+) 369 WP_327826230.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1090790 ACL6EQ_RS15470 WP_003220716.1 2977313..2977957(-) (comA) [Bacillus subtilis strain SY1483]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1090790 ACL6EQ_RS15470 WP_003220716.1 2977313..2977957(-) (comA) [Bacillus subtilis strain SY1483]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment