Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACL6EQ_RS13480 Genome accession   NZ_CP178716
Coordinates   2587291..2588037 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain SY1483     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2582291..2593037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS13455 (ACL6EQ_13455) mreC 2582697..2583569 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ACL6EQ_RS13460 (ACL6EQ_13460) mreB 2583600..2584613 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ACL6EQ_RS13465 (ACL6EQ_13465) radC 2584705..2585400 (-) 696 WP_014480455.1 RadC family protein -
  ACL6EQ_RS13470 (ACL6EQ_13470) maf 2585437..2586006 (-) 570 WP_024572904.1 Maf family nucleotide pyrophosphatase -
  ACL6EQ_RS13475 (ACL6EQ_13475) spoIIB 2586159..2587157 (-) 999 WP_128474144.1 stage II sporulation protein SpoIIB -
  ACL6EQ_RS13480 (ACL6EQ_13480) comC 2587291..2588037 (-) 747 WP_072592551.1 prepilin peptidase Machinery gene
  ACL6EQ_RS13485 (ACL6EQ_13485) folC 2588178..2589470 (-) 1293 WP_413358648.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACL6EQ_RS13490 (ACL6EQ_13490) valS 2589530..2592172 (-) 2643 WP_004398606.1 valine--tRNA ligase -
  ACL6EQ_RS13495 (ACL6EQ_13495) - 2592620..2592811 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=1090785 ACL6EQ_RS13480 WP_072592551.1 2587291..2588037(-) (comC) [Bacillus subtilis strain SY1483]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1090785 ACL6EQ_RS13480 WP_072592551.1 2587291..2588037(-) (comC) [Bacillus subtilis strain SY1483]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment