Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACL6EQ_RS12145 Genome accession   NZ_CP178716
Coordinates   2358694..2359461 (-) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus subtilis strain SY1483     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2353694..2364461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS12125 (ACL6EQ_12125) ppsR 2353868..2354680 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  ACL6EQ_RS12130 (ACL6EQ_12130) ccpN 2354706..2355344 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  ACL6EQ_RS12135 (ACL6EQ_12135) glyS 2355477..2357516 (-) 2040 WP_124058619.1 glycine--tRNA ligase subunit beta -
  ACL6EQ_RS12140 (ACL6EQ_12140) glyQ 2357509..2358396 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ACL6EQ_RS12145 (ACL6EQ_12145) recO 2358694..2359461 (-) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  ACL6EQ_RS12150 (ACL6EQ_12150) yqzL 2359498..2359641 (-) 144 WP_003230053.1 YqzL family protein -
  ACL6EQ_RS12155 (ACL6EQ_12155) era 2359789..2360694 (-) 906 WP_217000862.1 GTPase Era -
  ACL6EQ_RS12160 (ACL6EQ_12160) - 2360675..2361085 (-) 411 WP_413358502.1 cytidine deaminase -
  ACL6EQ_RS12165 (ACL6EQ_12165) unpK 2361204..2361575 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  ACL6EQ_RS12170 (ACL6EQ_12170) ybeY 2361556..2362029 (-) 474 WP_124058621.1 rRNA maturation RNase YbeY -
  ACL6EQ_RS12175 (ACL6EQ_12175) pgpH 2362030..2364165 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=1090777 ACL6EQ_RS12145 WP_015384118.1 2358694..2359461(-) (recO) [Bacillus subtilis strain SY1483]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1090777 ACL6EQ_RS12145 WP_015384118.1 2358694..2359461(-) (recO) [Bacillus subtilis strain SY1483]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTTTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTCTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAGCATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment