Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACL6EQ_RS11610 Genome accession   NZ_CP178716
Coordinates   2267761..2268564 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SY1483     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2262761..2273564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS11585 (ACL6EQ_11585) glpQB 2263898..2264629 (-) 732 WP_413358429.1 glycerophosphodiester phosphodiesterase -
  ACL6EQ_RS11590 (ACL6EQ_11590) yqiI 2264708..2265328 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ACL6EQ_RS11595 (ACL6EQ_11595) - 2265348..2265644 (-) 297 WP_014480225.1 hypothetical protein -
  ACL6EQ_RS11600 (ACL6EQ_11600) - 2265952..2266104 (+) 153 WP_128474049.1 hypothetical protein -
  ACL6EQ_RS11605 (ACL6EQ_11605) yqiG 2266177..2267295 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  ACL6EQ_RS11610 (ACL6EQ_11610) spo0A 2267761..2268564 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ACL6EQ_RS11615 (ACL6EQ_11615) spoIVB 2268840..2270120 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  ACL6EQ_RS11620 (ACL6EQ_11620) recN 2270295..2272025 (-) 1731 WP_413358434.1 DNA repair protein RecN Machinery gene
  ACL6EQ_RS11625 (ACL6EQ_11625) argR 2272062..2272511 (-) 450 WP_003230265.1 arginine repressor ArgR -
  ACL6EQ_RS11630 (ACL6EQ_11630) yqxC 2272609..2273454 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1090766 ACL6EQ_RS11610 WP_003226427.1 2267761..2268564(-) (spo0A) [Bacillus subtilis strain SY1483]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1090766 ACL6EQ_RS11610 WP_003226427.1 2267761..2268564(-) (spo0A) [Bacillus subtilis strain SY1483]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTACTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment