Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACL6EQ_RS10615 Genome accession   NZ_CP178716
Coordinates   2090494..2091114 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SY1483     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2085494..2096114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS10575 (ACL6EQ_10575) ptsA 2086624..2087130 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  ACL6EQ_RS10580 (ACL6EQ_10580) ypqA 2087268..2087687 (+) 420 WP_212130410.1 Hsp20/alpha crystallin family protein -
  ACL6EQ_RS10585 (ACL6EQ_10585) sppG 2087708..2088085 (-) 378 WP_014477159.1 YppG family protein -
  ACL6EQ_RS10590 (ACL6EQ_10590) yppF 2088274..2088462 (+) 189 WP_003230690.1 YppF family protein -
  ACL6EQ_RS10595 (ACL6EQ_10595) yppE 2088501..2088872 (-) 372 WP_015714151.1 YppE family protein -
  ACL6EQ_RS10600 (ACL6EQ_10600) yppD 2088918..2089163 (-) 246 WP_015251831.1 YppD family protein -
  ACL6EQ_RS10605 (ACL6EQ_10605) sspM 2089362..2089466 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ACL6EQ_RS10610 (ACL6EQ_10610) yppC 2089491..2090453 (-) 963 WP_063335220.1 DUF2515 domain-containing protein -
  ACL6EQ_RS10615 (ACL6EQ_10615) recU 2090494..2091114 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ACL6EQ_RS10620 (ACL6EQ_10620) ponA 2091136..2093880 (+) 2745 WP_129137759.1 transglycosylase domain-containing protein -
  ACL6EQ_RS10625 (ACL6EQ_10625) ypoC 2093956..2094450 (-) 495 WP_009967579.1 YpoC family protein -
  ACL6EQ_RS10630 (ACL6EQ_10630) nth 2094447..2095106 (-) 660 WP_009967580.1 endonuclease III -
  ACL6EQ_RS10635 (ACL6EQ_10635) dnaD 2095125..2095823 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1090765 ACL6EQ_RS10615 WP_004399067.1 2090494..2091114(+) (recU) [Bacillus subtilis strain SY1483]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1090765 ACL6EQ_RS10615 WP_004399067.1 2090494..2091114(+) (recU) [Bacillus subtilis strain SY1483]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCGCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment