Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACL6EQ_RS09800 Genome accession   NZ_CP178716
Coordinates   1957925..1959055 (+) Length   376 a.a.
NCBI ID   WP_134982820.1    Uniprot ID   -
Organism   Bacillus subtilis strain SY1483     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1950381..1960742 1957925..1959055 within 0


Gene organization within MGE regions


Location: 1950381..1960742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS09740 (ACL6EQ_09740) - 1950381..1951004 (-) 624 WP_024571441.1 hypothetical protein -
  ACL6EQ_RS09745 (ACL6EQ_09745) - 1951292..1951477 (-) 186 WP_101169519.1 hypothetical protein -
  ACL6EQ_RS09750 (ACL6EQ_09750) - 1951468..1951861 (-) 394 Protein_1893 UPF0715 family protein -
  ACL6EQ_RS09755 (ACL6EQ_09755) - 1951957..1952230 (-) 274 Protein_1894 hypothetical protein -
  ACL6EQ_RS09760 (ACL6EQ_09760) - 1952276..1952920 (-) 645 WP_024571442.1 HIRAN domain-containing protein -
  ACL6EQ_RS09765 (ACL6EQ_09765) - 1952954..1953418 (-) 465 WP_024571443.1 hypothetical protein -
  ACL6EQ_RS09770 (ACL6EQ_09770) - 1953719..1954060 (-) 342 WP_134982813.1 hypothetical protein -
  ACL6EQ_RS09775 (ACL6EQ_09775) - 1954082..1954783 (-) 702 WP_134982814.1 hypothetical protein -
  ACL6EQ_RS09780 (ACL6EQ_09780) - 1955429..1955794 (+) 366 WP_134982816.1 hypothetical protein -
  ACL6EQ_RS09785 (ACL6EQ_09785) - 1955939..1956218 (+) 280 Protein_1900 SOS response-associated peptidase family protein -
  ACL6EQ_RS09790 (ACL6EQ_09790) - 1956472..1956846 (+) 375 WP_021481445.1 YoqO family protein -
  ACL6EQ_RS09795 (ACL6EQ_09795) - 1957651..1957791 (+) 141 WP_134982818.1 phage holin -
  ACL6EQ_RS09800 (ACL6EQ_09800) rapC 1957925..1959055 (+) 1131 WP_134982820.1 tetratricopeptide repeat protein Regulator
  ACL6EQ_RS09805 (ACL6EQ_09805) - 1959045..1959188 (+) 144 WP_153801665.1 hypothetical protein -
  ACL6EQ_RS09810 (ACL6EQ_09810) - 1959342..1959542 (-) 201 WP_021481449.1 hypothetical protein -
  ACL6EQ_RS09815 (ACL6EQ_09815) - 1959765..1959934 (-) 170 Protein_1906 hypothetical protein -
  ACL6EQ_RS09820 (ACL6EQ_09820) - 1959932..1960087 (-) 156 Protein_1907 T7SS effector LXG polymorphic toxin -
  ACL6EQ_RS09825 (ACL6EQ_09825) yobM 1960188..1960736 (-) 549 Protein_1908 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44366.13 Da        Isoelectric Point: 5.7041

>NTDB_id=1090764 ACL6EQ_RS09800 WP_134982820.1 1957925..1959055(+) (rapC) [Bacillus subtilis strain SY1483]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIKSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1090764 ACL6EQ_RS09800 WP_134982820.1 1957925..1959055(+) (rapC) [Bacillus subtilis strain SY1483]
ATGGAGCAATTAATTCCGTCATCCACAGTAGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAAGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.383

100

0.457

Multiple sequence alignment