Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACL6EQ_RS07705 Genome accession   NZ_CP178716
Coordinates   1492550..1493443 (+) Length   297 a.a.
NCBI ID   WP_042975773.1    Uniprot ID   A0AAP1E7R0
Organism   Bacillus subtilis strain SY1483     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1487550..1498443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS07685 (ACL6EQ_07685) - 1488220..1489950 (+) 1731 WP_305090450.1 hypothetical protein -
  ACL6EQ_RS07690 (ACL6EQ_07690) ylqH 1489947..1490228 (+) 282 WP_213414486.1 FlhB-like flagellar biosynthesis protein -
  ACL6EQ_RS07695 (ACL6EQ_07695) sucC 1490401..1491558 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  ACL6EQ_RS07700 (ACL6EQ_07700) sucD 1491587..1492489 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  ACL6EQ_RS07705 (ACL6EQ_07705) dprA 1492550..1493443 (+) 894 WP_042975773.1 DNA-processing protein DprA Machinery gene
  ACL6EQ_RS07710 (ACL6EQ_07710) topA 1493632..1495707 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  ACL6EQ_RS07715 (ACL6EQ_07715) trmFO 1495783..1497090 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACL6EQ_RS07720 (ACL6EQ_07720) xerC 1497158..1498072 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32976.36 Da        Isoelectric Point: 9.9936

>NTDB_id=1090760 ACL6EQ_RS07705 WP_042975773.1 1492550..1493443(+) (dprA) [Bacillus subtilis strain SY1483]
MDQAAVCLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKTAALKNEIEQLYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRKPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=1090760 ACL6EQ_RS07705 WP_042975773.1 1492550..1493443(+) (dprA) [Bacillus subtilis strain SY1483]
TTGGATCAGGCCGCTGTCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAACAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAAACCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.653

100

0.987
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377

Multiple sequence alignment