Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACL6EQ_RS04690 Genome accession   NZ_CP178716
Coordinates   921105..921683 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SY1483     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 916105..926683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS04665 (ACL6EQ_04665) - 916616..917131 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  ACL6EQ_RS04670 (ACL6EQ_04670) - 917372..917998 (-) 627 Protein_879 protoglobin domain-containing protein -
  ACL6EQ_RS04675 (ACL6EQ_04675) comW 918053..919582 (-) 1530 WP_130572185.1 FAD-dependent oxidoreductase -
  ACL6EQ_RS04680 (ACL6EQ_04680) yhxC 919694..920551 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  ACL6EQ_RS04685 (ACL6EQ_04685) yhzC 920579..920812 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ACL6EQ_RS04690 (ACL6EQ_04690) comK 921105..921683 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  ACL6EQ_RS04695 (ACL6EQ_04695) yhxD 921728..922627 (-) 900 WP_086343663.1 SDR family oxidoreductase -
  ACL6EQ_RS04700 (ACL6EQ_04700) yhjA 922841..923110 (+) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  ACL6EQ_RS04705 (ACL6EQ_04705) yhjB 923154..924623 (-) 1470 WP_305090562.1 sodium:solute symporter family protein -
  ACL6EQ_RS04710 (ACL6EQ_04710) yhjC 924620..924820 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ACL6EQ_RS04715 (ACL6EQ_04715) - 925019..925390 (-) 372 WP_014476361.1 hypothetical protein -
  ACL6EQ_RS04720 (ACL6EQ_04720) yhjE 925542..926165 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  ACL6EQ_RS04725 (ACL6EQ_04725) lepB 926167..926673 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1090745 ACL6EQ_RS04690 WP_003245329.1 921105..921683(+) (comK) [Bacillus subtilis strain SY1483]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1090745 ACL6EQ_RS04690 WP_003245329.1 921105..921683(+) (comK) [Bacillus subtilis strain SY1483]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment