Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACL60T_RS16925 Genome accession   NZ_CP178659
Coordinates   3184201..3184830 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain VTB96933v     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3179201..3189830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL60T_RS16910 (ACL60T_16890) helD 3179443..3181497 (-) 2055 WP_269541918.1 DNA helicase IV -
  ACL60T_RS16915 (ACL60T_16895) yccF 3181620..3182066 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACL60T_RS16920 (ACL60T_16900) yccS 3182076..3184238 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ACL60T_RS16925 (ACL60T_16905) sxy/tfoX 3184201..3184830 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACL60T_RS16930 (ACL60T_16910) sulA 3185049..3185558 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACL60T_RS16935 (ACL60T_16915) ompA 3185915..3186967 (+) 1053 WP_000750418.1 porin OmpA -
  ACL60T_RS16940 (ACL60T_16920) matP 3187043..3187495 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACL60T_RS16945 (ACL60T_16925) ycbZ 3187681..3189441 (+) 1761 WP_000156477.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1090724 ACL60T_RS16925 WP_000839153.1 3184201..3184830(-) (sxy/tfoX) [Escherichia coli strain VTB96933v]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1090724 ACL60T_RS16925 WP_000839153.1 3184201..3184830(-) (sxy/tfoX) [Escherichia coli strain VTB96933v]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment