Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACLKML_RS14315 Genome accession   NZ_CP178628
Coordinates   1464211..1464726 (+) Length   171 a.a.
NCBI ID   WP_413283758.1    Uniprot ID   -
Organism   Vibrio sp. MA40-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1459211..1469726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKML_RS14305 (ACLKML_14305) - 1459526..1462378 (+) 2853 WP_413283756.1 M16 family metallopeptidase -
  ACLKML_RS14310 (ACLKML_14310) gshA 1462601..1464166 (+) 1566 WP_413283757.1 glutamate--cysteine ligase -
  ACLKML_RS14315 (ACLKML_14315) luxS 1464211..1464726 (+) 516 WP_413283758.1 S-ribosylhomocysteine lyase Regulator
  ACLKML_RS14320 (ACLKML_14320) - 1464823..1466088 (-) 1266 WP_413283759.1 HlyC/CorC family transporter -
  ACLKML_RS14325 (ACLKML_14325) - 1466183..1466980 (-) 798 WP_413283760.1 inner membrane protein YpjD -
  ACLKML_RS14330 (ACLKML_14330) ffh 1467178..1468569 (+) 1392 WP_413283761.1 signal recognition particle protein -
  ACLKML_RS14335 (ACLKML_14335) rpsP 1468802..1469050 (+) 249 WP_317716906.1 30S ribosomal protein S16 -
  ACLKML_RS14340 (ACLKML_14340) rimM 1469070..1469624 (+) 555 WP_413283762.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19126.90 Da        Isoelectric Point: 4.7533

>NTDB_id=1090697 ACLKML_RS14315 WP_413283758.1 1464211..1464726(+) (luxS) [Vibrio sp. MA40-2]
MPLLDSFTVDHTKMNAPAVRVAKKMQTPKGDTITVFDLRFCAPNKDILSEKGIHTLEHLYAGFMRSHLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEERVAKAWLDSMDDVLEVENQNKIPELNEYQCGTYDMHSLKEAKDIATDIIKAGVLVNKNDELA
LPDSILKELNN

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1090697 ACLKML_RS14315 WP_413283758.1 1464211..1464726(+) (luxS) [Vibrio sp. MA40-2]
ATGCCGTTATTAGATAGCTTTACTGTAGATCACACCAAAATGAACGCGCCAGCAGTACGCGTAGCCAAAAAAATGCAAAC
ACCGAAAGGTGATACTATTACGGTATTTGATTTACGCTTTTGTGCTCCGAATAAAGATATTCTTTCTGAAAAAGGCATTC
ATACATTAGAGCATTTATACGCCGGATTTATGCGTTCACATTTGAATGGGAGTGATGTTGAAATAATTGATATTTCTCCA
ATGGGTTGTCGTACTGGTTTTTATATGAGCTTAATAGGTACACCAACAGAAGAGCGTGTAGCCAAAGCTTGGCTAGACTC
AATGGATGATGTACTTGAAGTAGAGAATCAGAACAAAATACCAGAACTAAATGAATATCAATGTGGTACTTACGATATGC
ATTCATTGAAGGAAGCAAAAGACATTGCGACCGATATTATTAAAGCAGGTGTGTTAGTGAATAAAAATGATGAACTGGCT
TTACCCGATAGCATTTTGAAAGAATTAAATAACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

81.065

98.83

0.801

Multiple sequence alignment