Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACL66B_RS10985 Genome accession   NZ_CP178617
Coordinates   2170154..2170774 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain QXKL-3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2165154..2175774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL66B_RS10945 (ACL66B_10945) ptsA 2166285..2166791 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  ACL66B_RS10950 (ACL66B_10950) ypqA 2166929..2167348 (+) 420 WP_041849958.1 Hsp20/alpha crystallin family protein -
  ACL66B_RS10955 (ACL66B_10955) sppG 2167369..2167746 (-) 378 WP_004398696.1 YppG family protein -
  ACL66B_RS10960 (ACL66B_10960) yppF 2167934..2168122 (+) 189 WP_003230690.1 YppF family protein -
  ACL66B_RS10965 (ACL66B_10965) yppE 2168161..2168532 (-) 372 WP_021481525.1 YppE family protein -
  ACL66B_RS10970 (ACL66B_10970) yppD 2168578..2168823 (-) 246 WP_041849959.1 DUF5446 family protein -
  ACL66B_RS10975 (ACL66B_10975) sspM 2169022..2169126 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ACL66B_RS10980 (ACL66B_10980) yppC 2169151..2170113 (-) 963 WP_041849960.1 DUF2515 domain-containing protein -
  ACL66B_RS10985 (ACL66B_10985) recU 2170154..2170774 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ACL66B_RS10990 (ACL66B_10990) ponA 2170796..2173546 (+) 2751 WP_041849961.1 PBP1A family penicillin-binding protein -
  ACL66B_RS10995 (ACL66B_10995) ypoC 2173621..2174115 (-) 495 WP_041849962.1 YpoC family protein -
  ACL66B_RS11000 (ACL66B_11000) nth 2174112..2174771 (-) 660 WP_009967580.1 endonuclease III -
  ACL66B_RS11005 (ACL66B_11005) dnaD 2174790..2175488 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1090559 ACL66B_RS10985 WP_004399067.1 2170154..2170774(+) (recU) [Bacillus subtilis strain QXKL-3]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1090559 ACL66B_RS10985 WP_004399067.1 2170154..2170774(+) (recU) [Bacillus subtilis strain QXKL-3]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment