Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACL66B_RS10180 Genome accession   NZ_CP178617
Coordinates   2038862..2039992 (+) Length   376 a.a.
NCBI ID   WP_021481447.1    Uniprot ID   -
Organism   Bacillus subtilis strain QXKL-3     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2037497..2060278 2038862..2039992 within 0


Gene organization within MGE regions


Location: 2037497..2060278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL66B_RS10170 (ACL66B_10170) - 2037497..2037871 (+) 375 WP_021481445.1 YoqO family protein -
  ACL66B_RS10175 (ACL66B_10175) - 2038652..2038729 (+) 78 WP_227057947.1 phage holin -
  ACL66B_RS10180 (ACL66B_10180) rapC 2038862..2039992 (+) 1131 WP_021481447.1 tetratricopeptide repeat protein Regulator
  ACL66B_RS10185 (ACL66B_10185) - 2039982..2040125 (+) 144 WP_153801665.1 hypothetical protein -
  ACL66B_RS10190 (ACL66B_10190) - 2040279..2040479 (-) 201 WP_021481449.1 hypothetical protein -
  ACL66B_RS10195 (ACL66B_10195) - 2040701..2041075 (-) 375 Protein_1953 UV damage repair protein UvrX -
  ACL66B_RS10200 (ACL66B_10200) - 2041073..2041228 (-) 156 Protein_1954 T7SS effector LXG polymorphic toxin -
  ACL66B_RS10205 (ACL66B_10205) yobM 2041329..2041886 (-) 558 WP_038829958.1 SMI1/KNR4 family protein -
  ACL66B_RS10210 (ACL66B_10210) aoxN 2042014..2043450 (+) 1437 WP_120363441.1 flavin monoamine oxidase family protein -
  ACL66B_RS10215 (ACL66B_10215) csaA 2043700..2044032 (-) 333 WP_032725963.1 chaperone CsaA -
  ACL66B_RS10220 (ACL66B_10220) yobQ 2044097..2044822 (-) 726 WP_072175277.1 helix-turn-helix domain-containing protein -
  ACL66B_RS10225 (ACL66B_10225) yobR 2044837..2045577 (-) 741 WP_041849922.1 GNAT family N-acetyltransferase -
  ACL66B_RS10230 (ACL66B_10230) yobS 2045655..2046230 (-) 576 WP_015714086.1 TetR/AcrR family transcriptional regulator -
  ACL66B_RS10235 (ACL66B_10235) yobT 2046236..2046937 (-) 702 WP_015714087.1 MBL fold metallo-hydrolase -
  ACL66B_RS10240 (ACL66B_10240) yobU 2047013..2047495 (-) 483 WP_014480008.1 GyrI-like domain-containing protein -
  ACL66B_RS10245 (ACL66B_10245) yobV 2047549..2048487 (-) 939 WP_015714088.1 helix-turn-helix transcriptional regulator -
  ACL66B_RS10250 (ACL66B_10250) csk22 2048692..2049237 (+) 546 WP_015714089.1 mother cell-specific sporulation protein Csk22 -
  ACL66B_RS10255 (ACL66B_10255) czrA 2049264..2049587 (-) 324 WP_003231284.1 Zn(II)-responsive metalloregulatory transcriptional repressor CzrA -
  ACL66B_RS10260 (ACL66B_10260) yocA 2049782..2050459 (+) 678 WP_014480011.1 lysozyme family protein -
  ACL66B_RS10265 (ACL66B_10265) ctaM 2050549..2051085 (-) 537 WP_003231280.1 DUF420 domain-containing protein -
  ACL66B_RS10270 (ACL66B_10270) yocB 2051222..2052004 (-) 783 WP_015251912.1 VLRF1 family aeRF1-type release factor -
  ACL66B_RS10275 (ACL66B_10275) yocC 2052175..2052672 (+) 498 WP_015714090.1 GNAT family N-acetyltransferase -
  ACL66B_RS10280 (ACL66B_10280) yocD 2052736..2053713 (+) 978 WP_015714091.1 S66 peptidase family protein -
  ACL66B_RS10285 (ACL66B_10285) desE 2053876..2054934 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  ACL66B_RS10290 (ACL66B_10290) desK 2055054..2056166 (+) 1113 WP_014480016.1 two-component sensor histidine kinase DesK -
  ACL66B_RS10295 (ACL66B_10295) desR 2056185..2056784 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  ACL66B_RS10300 (ACL66B_10300) walN 2057392..2058255 (-) 864 WP_014480017.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  ACL66B_RS10305 (ACL66B_10305) recQ 2058503..2060278 (-) 1776 WP_015714092.1 DNA helicase RecQ -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=1090558 ACL66B_RS10180 WP_021481447.1 2038862..2039992(+) (rapC) [Bacillus subtilis strain QXKL-3]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1090558 ACL66B_RS10180 WP_021481447.1 2038862..2039992(+) (rapC) [Bacillus subtilis strain QXKL-3]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455

Multiple sequence alignment