Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACKUFW_RS12970 Genome accession   NZ_CP178610
Coordinates   2648509..2649261 (-) Length   250 a.a.
NCBI ID   WP_202735648.1    Uniprot ID   -
Organism   Bacillus velezensis strain GUMHT p116     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2643509..2654261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUFW_RS12945 (ACKUFW_12945) mreC 2643945..2644808 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  ACKUFW_RS12950 (ACKUFW_12950) mreB 2644839..2645852 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ACKUFW_RS12955 (ACKUFW_12955) radC 2645944..2646639 (-) 696 WP_007408165.1 RadC family protein -
  ACKUFW_RS12960 (ACKUFW_12960) - 2646671..2647240 (-) 570 WP_202735647.1 Maf family protein -
  ACKUFW_RS12965 (ACKUFW_12965) - 2647381..2648382 (-) 1002 WP_165409507.1 SPOR domain-containing protein -
  ACKUFW_RS12970 (ACKUFW_12970) comC 2648509..2649261 (-) 753 WP_202735648.1 prepilin peptidase Machinery gene
  ACKUFW_RS12975 (ACKUFW_12975) - 2649401..2650693 (-) 1293 WP_071391542.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACKUFW_RS12980 (ACKUFW_12980) - 2650752..2653394 (-) 2643 WP_202735649.1 valine--tRNA ligase -
  ACKUFW_RS12985 (ACKUFW_12985) - 2653847..2654038 (+) 192 WP_060674742.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27134.83 Da        Isoelectric Point: 9.2521

>NTDB_id=1090493 ACKUFW_RS12970 WP_202735648.1 2648509..2649261(-) (comC) [Bacillus velezensis strain GUMHT p116]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPIVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1090493 ACKUFW_RS12970 WP_202735648.1 2648509..2649261(-) (comC) [Bacillus velezensis strain GUMHT p116]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCATCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGATTTGCCGGAGCTGTTTGCGGATTTTTTCTGCTAGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment