Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACKUFW_RS12090 Genome accession   NZ_CP178610
Coordinates   2491841..2492608 (-) Length   255 a.a.
NCBI ID   WP_071391600.1    Uniprot ID   -
Organism   Bacillus velezensis strain GUMHT p116     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2486841..2497608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUFW_RS12070 (ACKUFW_12070) - 2487043..2487855 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  ACKUFW_RS12075 (ACKUFW_12075) ccpN 2487881..2488519 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  ACKUFW_RS12080 (ACKUFW_12080) glyS 2488620..2490659 (-) 2040 WP_202735633.1 glycine--tRNA ligase subunit beta -
  ACKUFW_RS12085 (ACKUFW_12085) glyQ 2490652..2491539 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  ACKUFW_RS12090 (ACKUFW_12090) recO 2491841..2492608 (-) 768 WP_071391600.1 DNA repair protein RecO Machinery gene
  ACKUFW_RS12095 (ACKUFW_12095) - 2492645..2492788 (-) 144 WP_007408286.1 YqzL family protein -
  ACKUFW_RS12100 (ACKUFW_12100) era 2492944..2493849 (-) 906 WP_007408285.1 GTPase Era -
  ACKUFW_RS12105 (ACKUFW_12105) - 2493830..2494240 (-) 411 WP_003152976.1 cytidine deaminase -
  ACKUFW_RS12110 (ACKUFW_12110) - 2494364..2494738 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  ACKUFW_RS12115 (ACKUFW_12115) ybeY 2494719..2495192 (-) 474 WP_202735634.1 rRNA maturation RNase YbeY -
  ACKUFW_RS12120 (ACKUFW_12120) - 2495193..2497325 (-) 2133 WP_015387990.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29273.87 Da        Isoelectric Point: 8.3139

>NTDB_id=1090486 ACKUFW_RS12090 WP_071391600.1 2491841..2492608(-) (recO) [Bacillus velezensis strain GUMHT p116]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKHVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1090486 ACKUFW_RS12090 WP_071391600.1 2491841..2492608(-) (recO) [Bacillus velezensis strain GUMHT p116]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CGAAAAACGAAATTAAACATGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment