Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ACKUFW_RS06975 Genome accession   NZ_CP178610
Coordinates   1328023..1328487 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain GUMHT p116     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1323023..1333487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUFW_RS06955 (ACKUFW_06955) - 1323504..1325324 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  ACKUFW_RS06960 (ACKUFW_06960) - 1325305..1326518 (-) 1214 Protein_1311 aminotransferase A -
  ACKUFW_RS06965 (ACKUFW_06965) - 1326719..1326880 (-) 162 WP_007409608.1 hypothetical protein -
  ACKUFW_RS06970 (ACKUFW_06970) cheV 1327069..1327980 (+) 912 WP_071391910.1 chemotaxis protein CheV -
  ACKUFW_RS06975 (ACKUFW_06975) kre 1328023..1328487 (-) 465 WP_003154622.1 YkyB family protein Regulator
  ACKUFW_RS06980 (ACKUFW_06980) - 1328610..1329902 (-) 1293 WP_071391909.1 MFS transporter -
  ACKUFW_RS06985 (ACKUFW_06985) - 1329978..1330472 (-) 495 WP_102421873.1 L,D-transpeptidase family protein -
  ACKUFW_RS06990 (ACKUFW_06990) - 1330547..1331410 (-) 864 WP_071391907.1 metallophosphoesterase -
  ACKUFW_RS06995 (ACKUFW_06995) fadH 1331554..1332318 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  ACKUFW_RS07000 (ACKUFW_07000) - 1332429..1332977 (+) 549 WP_071391906.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=1090467 ACKUFW_RS06975 WP_003154622.1 1328023..1328487(-) (kre) [Bacillus velezensis strain GUMHT p116]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1090467 ACKUFW_RS06975 WP_003154622.1 1328023..1328487(-) (kre) [Bacillus velezensis strain GUMHT p116]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment