Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACLRDN_RS20805 Genome accession   NZ_CP178608
Coordinates   4552293..4553783 (+) Length   496 a.a.
NCBI ID   WP_413457830.1    Uniprot ID   -
Organism   Herbaspirillum huttiense strain HhutSZ1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4547293..4558783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLRDN_RS20780 (ACLRDN_20780) - 4548601..4549629 (+) 1029 WP_413457825.1 KpsF/GutQ family sugar-phosphate isomerase -
  ACLRDN_RS20785 (ACLRDN_20785) - 4549629..4550183 (+) 555 WP_413457826.1 KdsC family phosphatase -
  ACLRDN_RS20790 (ACLRDN_20790) lptC 4550180..4550788 (+) 609 WP_413457827.1 LPS export ABC transporter periplasmic protein LptC -
  ACLRDN_RS20795 (ACLRDN_20795) lptA 4550840..4551478 (+) 639 WP_413457828.1 lipopolysaccharide transport periplasmic protein LptA -
  ACLRDN_RS20800 (ACLRDN_20800) lptB 4551481..4552224 (+) 744 WP_413457829.1 LPS export ABC transporter ATP-binding protein -
  ACLRDN_RS20805 (ACLRDN_20805) rpoN/rpoN1 4552293..4553783 (+) 1491 WP_413457830.1 RNA polymerase factor sigma-54 Machinery gene
  ACLRDN_RS20810 (ACLRDN_20810) hpf 4553936..4554298 (+) 363 WP_034331451.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACLRDN_RS20815 (ACLRDN_20815) grxD 4554670..4554981 (+) 312 WP_039784040.1 Grx4 family monothiol glutaredoxin -
  ACLRDN_RS20820 (ACLRDN_20820) - 4555004..4555606 (+) 603 WP_413457831.1 UbiX family flavin prenyltransferase -
  ACLRDN_RS20825 (ACLRDN_20825) - 4555671..4555961 (+) 291 WP_329801841.1 type II toxin-antitoxin system HigB family toxin -
  ACLRDN_RS20830 (ACLRDN_20830) - 4555949..4556374 (+) 426 WP_209535180.1 helix-turn-helix domain-containing protein -
  ACLRDN_RS20835 (ACLRDN_20835) - 4556459..4557217 (-) 759 WP_088756088.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55022.57 Da        Isoelectric Point: 5.0429

>NTDB_id=1090436 ACLRDN_RS20805 WP_413457830.1 4552293..4553783(+) (rpoN/rpoN1) [Herbaspirillum huttiense strain HhutSZ1]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILSDNPLLERLDDALDNSVRLLADGAVSSSPSSGVAEAPGE
GSGEAAPAAADGDSSFEYQDNSPDNGVTGDADWSFDDVARSGKSPDDDDARPQLEAHELTLREHLLEQIRVTARTLRDRA
LLELLTDALDESGYLEEPLEDILARLPEELGIDMEELSISLKLLQSLDPAGVGARSAGECLALQIRRLPKIPFVTRKLAL
RIVEDYLPLFAQRDFNKIKKALDCDDEDLREAQAVIRQCRPHPGAEFARDASDYVVPDVIVKQTKNGWQVMLNHEVMPKL
RVNAMYASALKQAKGEGSLSSQLQEAKWLIKNMRQRFDTILRVAQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHEST
ISRVTTQKYMLTPHGMFELKYFFGSHVATETGGEASSTAIRALIKQLIGAENPQTPLSDSKIADMLAEQGMVVARRTVAK
YREVLKIPPVNLRKSL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1090436 ACLRDN_RS20805 WP_413457830.1 4552293..4553783(+) (rpoN/rpoN1) [Herbaspirillum huttiense strain HhutSZ1]
ATGAAACAGTCGCTCCAGTTACGTACCTCGCAGCACCTCGCCTTGACGCCGCAACTGCAGCAGTCGATCAGGCTGCTGCA
ACTGTCGACGCTGGAACTGCACCAGGAACTGGAACAGATCCTCTCCGACAATCCCCTGCTGGAGCGCCTCGACGATGCGC
TCGACAATTCGGTGCGCCTGCTGGCCGATGGCGCCGTCTCCAGTTCGCCCTCCAGCGGAGTGGCCGAGGCGCCCGGCGAA
GGCAGCGGCGAAGCCGCACCGGCGGCGGCCGATGGCGATTCCAGTTTCGAGTACCAGGACAACAGTCCCGACAACGGCGT
CACCGGCGATGCGGATTGGAGCTTCGACGATGTCGCACGCAGCGGCAAGTCGCCGGACGACGACGATGCCCGTCCGCAAC
TGGAAGCCCACGAACTGACCCTGCGCGAACACCTGCTGGAACAGATCCGCGTGACCGCGCGTACCCTGCGCGATCGTGCG
CTGCTGGAGCTGCTCACCGATGCGTTGGACGAGAGCGGCTATCTGGAAGAGCCGCTGGAAGACATCCTCGCGCGCCTGCC
CGAAGAGTTGGGCATCGACATGGAAGAGCTGTCCATCTCGCTCAAGCTGCTGCAGAGCCTGGACCCGGCCGGTGTGGGCG
CGCGCAGTGCCGGCGAATGCCTGGCCTTGCAGATCCGCCGCCTGCCCAAGATCCCCTTCGTGACGCGCAAGCTGGCGCTG
AGGATCGTTGAGGATTACCTGCCGCTGTTTGCCCAGCGCGATTTCAACAAGATCAAGAAGGCCCTGGATTGCGATGACGA
AGACCTGCGTGAGGCCCAGGCCGTGATCCGCCAGTGCCGTCCGCATCCGGGCGCGGAATTCGCGCGCGATGCCTCGGACT
ATGTGGTGCCGGACGTGATTGTCAAGCAGACAAAGAACGGCTGGCAGGTCATGCTCAACCATGAGGTCATGCCCAAGCTG
CGCGTCAATGCGATGTATGCCAGTGCCTTGAAGCAAGCCAAGGGCGAGGGTTCGCTGTCGTCGCAGTTGCAGGAAGCCAA
GTGGCTCATCAAGAACATGCGGCAACGTTTCGATACAATTTTGCGTGTCGCGCAGGCTATTGTGGAACGTCAAAGAAACT
TCTTTTCACATGGGGCAGTGGCCATGCGCCCCCTTGTGCTGCGTGAAATTGCTGATACACTGGGTCTACACGAGAGCACT
ATCTCTCGCGTGACGACTCAGAAATACATGCTCACTCCGCATGGAATGTTTGAGTTGAAATACTTCTTCGGTAGCCATGT
CGCGACTGAAACCGGAGGTGAAGCTTCCTCCACCGCGATACGGGCGCTGATCAAACAGTTGATAGGAGCCGAGAACCCGC
AGACCCCATTATCCGATAGCAAGATTGCGGATATGCTGGCAGAACAAGGCATGGTGGTCGCGCGACGCACAGTCGCCAAA
TACCGCGAAGTGTTGAAGATTCCGCCGGTCAATCTCCGCAAGTCCCTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(135-326)

Sigma-54, DNA binding domain (Sigma54_DBD)

(339-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

59.252

100

0.607

Multiple sequence alignment