Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ACJQW4_RS15290 Genome accession   NZ_CP178606
Coordinates   3225506..3226132 (-) Length   208 a.a.
NCBI ID   WP_281070017.1    Uniprot ID   -
Organism   Acinetobacter sp. A7.4     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3220506..3231132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJQW4_RS15260 (ACJQW4_15260) - 3220926..3221357 (-) 432 WP_241625050.1 SRPBCC family protein -
  ACJQW4_RS15265 (ACJQW4_15265) tadA 3221419..3221931 (-) 513 WP_241625048.1 tRNA adenosine(34) deaminase TadA -
  ACJQW4_RS15270 (ACJQW4_15270) - 3221936..3223060 (-) 1125 WP_100242423.1 enoyl-CoA hydratase/isomerase family protein -
  ACJQW4_RS15275 (ACJQW4_15275) ung 3223057..3223770 (-) 714 WP_241625046.1 uracil-DNA glycosylase -
  ACJQW4_RS15280 (ACJQW4_15280) - 3223813..3224409 (-) 597 WP_241625043.1 6-pyruvoyl trahydropterin synthase family protein -
  ACJQW4_RS15285 (ACJQW4_15285) gspK 3224518..3225465 (-) 948 WP_241625041.1 type II secretion system minor pseudopilin GspK -
  ACJQW4_RS15290 (ACJQW4_15290) xcpW 3225506..3226132 (-) 627 WP_281070017.1 type II secretion system protein GspJ Machinery gene
  ACJQW4_RS15295 (ACJQW4_15295) xcpV 3226135..3226506 (-) 372 WP_241625035.1 type II secretion system minor pseudopilin GspI Machinery gene
  ACJQW4_RS15300 (ACJQW4_15300) - 3226496..3227065 (-) 570 WP_241625032.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACJQW4_RS15305 (ACJQW4_15305) - 3227081..3227680 (-) 600 WP_241625030.1 TetR/AcrR family transcriptional regulator -
  ACJQW4_RS15310 (ACJQW4_15310) - 3227735..3228508 (-) 774 WP_241625028.1 TatD family hydrolase -
  ACJQW4_RS15315 (ACJQW4_15315) - 3228533..3228874 (-) 342 WP_241625026.1 PilZ domain-containing protein -
  ACJQW4_RS15320 (ACJQW4_15320) - 3228887..3229873 (-) 987 WP_241625323.1 DNA polymerase III subunit delta' -
  ACJQW4_RS15325 (ACJQW4_15325) kdsB 3229886..3230647 (-) 762 WP_241625023.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23463.88 Da        Isoelectric Point: 7.0180

>NTDB_id=1090420 ACJQW4_RS15290 WP_281070017.1 3225506..3226132(-) (xcpW) [Acinetobacter sp. A7.4]
MPKRAGFTLVELLVAIAIFAVLSALGWKVFDYLIKVKERNAQHEQKLASLQQAYQQILKDTIQIAPLTSNLNSEIQPALI
LQNGRFTFSKVGVTDPLLQGIPPEERVEYQYQADTQTLNRLRTRGLNAQSQTQPESSVLLENVEQFQVVVLNPNEVSAWP
EISGQSDDALIKKRLPRGIKINLTVNGVAYEWIFSLLNTDYLDKKQNS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1090420 ACJQW4_RS15290 WP_281070017.1 3225506..3226132(-) (xcpW) [Acinetobacter sp. A7.4]
ATGCCTAAACGTGCAGGTTTTACTTTGGTTGAGCTTTTGGTGGCAATTGCAATTTTTGCAGTATTGTCTGCTTTAGGCTG
GAAAGTTTTCGATTACCTGATCAAAGTTAAAGAGCGAAATGCACAACATGAACAGAAATTGGCAAGTTTGCAGCAAGCCT
ATCAACAGATATTAAAAGATACCATTCAGATTGCCCCATTAACCTCAAATCTGAATAGTGAAATTCAGCCTGCTTTAATC
TTACAAAATGGTCGTTTTACTTTTAGTAAGGTGGGGGTGACGGATCCTTTATTACAAGGTATTCCTCCTGAAGAGCGCGT
TGAATATCAATATCAAGCGGATACTCAAACCTTAAATCGTTTACGTACTCGTGGTTTAAATGCTCAATCACAGACGCAGC
CGGAATCCAGTGTTCTACTGGAAAATGTTGAACAATTTCAGGTGGTCGTGTTGAATCCAAACGAAGTTTCCGCTTGGCCT
GAAATATCAGGACAATCTGATGATGCTTTGATCAAGAAGCGCTTACCTCGGGGGATAAAAATCAATTTAACGGTGAATGG
TGTAGCGTATGAGTGGATTTTTAGCTTGCTGAATACAGATTATTTAGATAAAAAACAAAATAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(81-191)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

56.5

96.154

0.543

Multiple sequence alignment