Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACL656_RS14475 Genome accession   NZ_CP178597
Coordinates   3009626..3010255 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ZF8-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3004626..3015255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL656_RS14460 (ACL656_14460) helD 3004868..3006922 (-) 2055 WP_129949006.1 DNA helicase IV -
  ACL656_RS14465 (ACL656_14465) yccF 3007045..3007491 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACL656_RS14470 (ACL656_14470) yccS 3007501..3009663 (+) 2163 WP_000323868.1 YccS family putative transporter -
  ACL656_RS14475 (ACL656_14475) sxy/tfoX 3009626..3010255 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACL656_RS14480 (ACL656_14480) sulA 3010474..3010983 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  ACL656_RS14485 (ACL656_14485) ompA 3011340..3012392 (+) 1053 WP_021577220.1 porin OmpA -
  ACL656_RS14490 (ACL656_14490) matP 3012468..3012920 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ACL656_RS14495 (ACL656_14495) ycbZ 3013106..3014866 (+) 1761 WP_021577219.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1090365 ACL656_RS14475 WP_000839153.1 3009626..3010255(-) (sxy/tfoX) [Escherichia coli strain ZF8-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1090365 ACL656_RS14475 WP_000839153.1 3009626..3010255(-) (sxy/tfoX) [Escherichia coli strain ZF8-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment