Detailed information NTG1090348

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ABFT42_RS19045
• Genome accession: NZ_CP178596
• Coordinates: 3682539..3683684 (+)
• Length: 381 a.a.
• NCBI ID: WP_168749007.1
• Uniprot ID: -
• Organism: Bacillus mojavensis strain C3
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3677539..3688684

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFT42_RS19025 (ABFT42_19025)	-	3677583..3678860 (+)	1278	WP_413286671.1	M16 family metallopeptidase	-
ABFT42_RS19030 (ABFT42_19030)	-	3678857..3679558 (+)	702	WP_413286672.1	bacteriocin biosynthesis protein AlbG	-
ABFT42_RS19035 (ABFT42_19035)	-	3679565..3680920 (-)	1356	WP_413286673.1	YncE family protein	-
ABFT42_RS19040 (ABFT42_19040)	-	3680961..3682313 (-)	1353	WP_413286674.1	YncE family protein	-
ABFT42_RS19045 (ABFT42_19045)	rapF	3682539..3683684 (+)	1146	WP_168749007.1	tetratricopeptide repeat protein	Regulator
ABFT42_RS19050 (ABFT42_19050)	-	3683668..3683787 (+)	120	WP_024123223.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
ABFT42_RS19055 (ABFT42_19055)	speB	3683894..3684766 (-)	873	WP_010332291.1	agmatinase	-
ABFT42_RS19060 (ABFT42_19060)	speE	3684827..3685657 (-)	831	WP_413286675.1	spermidine synthase	-
ABFT42_RS19065 (ABFT42_19065)	-	3685858..3687933 (+)	2076	WP_326334189.1	transglycosylase domain-containing protein	-
ABFT42_RS19070 (ABFT42_19070)	-	3687966..3688388 (-)	423	WP_286059345.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45697.34 Da
• Isoelectric Point: 4.9324

>NTDB_id=1090348 ABFT42_RS19045 WP_168749007.1 3682539..3683684(+) (rapF) [Bacillus mojavensis strain C3]
MTSVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELAQIEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYILAIQFFKKAESKLNFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYNEQTTYDIRMIQCQSLFGANFLDLKQYDKAIAHFQKAYTLAEAEQQPQLMGRTLYNIALCKQNQHSLES
AIEYVKKSIHVFEESKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGREYSIAAEDTVYLMEFEFLESLYLSGPDEEAI
EKCFVFLESKMMYADIEDFALDVAKYYHQKENYKKASTYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=1090348 ABFT42_RS19045 WP_168749007.1 3682539..3683684(+) (rapF) [Bacillus mojavensis strain C3]
GTGACAAGTGTCATATCTTCTTCTTCCGTGGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACC
GGATGCGGAATACTTACGAAGAGAAATCAAACAAGAGCTGGCCCAAATAGAAGAAGACCAGGATCTTCATTTGTATTATT
CACTGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTTGAACCGTTAGAAAAAATGCGGATAGAGGAACAGCCGCGA
CTGTCCGATTTGCTGCTTGAAATTGATAAAAAACAGGCTCGTTTAACCGGACTGCTTGAATACTACTTTAATTTCTTCAG
AGGTATGTACGAACTGGACCGCCGGGAATATATATTAGCCATTCAATTTTTTAAAAAAGCAGAGAGCAAACTGAATTTTG
TTAAAGATAAAATTGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTGTATTACTATATGAAGCAAACTTATGTGTCC
ATGGACTATGCACGTCAAGCCTTTGAAATATACAATGAACAAACTACATATGATATCAGAATGATTCAATGCCAGTCCCT
GTTTGGAGCTAACTTTTTGGACCTGAAACAGTATGATAAAGCAATTGCTCATTTCCAAAAAGCTTATACACTTGCTGAAG
CAGAACAGCAGCCGCAGCTAATGGGAAGAACGCTTTATAATATTGCACTTTGCAAGCAAAACCAACACAGCCTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCATGTTTTTGAAGAATCGAAAATGCTACCTTCACTGCCACAAGCCTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCTTGTGAATATCATAAAAAAGGAAGAGAATATTCAATAG
CTGCCGAAGACACTGTGTACTTAATGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCTGATGAAGAAGCAATA
GAAAAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTTGCACTCGATGTTGCTAAGTATTA
TCATCAGAAGGAAAATTACAAAAAAGCATCTACTTATTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_8) (193-213)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.79	100	0.798
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57