Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ABFT42_RS14030 Genome accession   NZ_CP178596
Coordinates   2675637..2676383 (-) Length   248 a.a.
NCBI ID   WP_413286449.1    Uniprot ID   -
Organism   Bacillus mojavensis strain C3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2670637..2681383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS14005 (ABFT42_14005) mreC 2671046..2671918 (-) 873 WP_010335163.1 rod shape-determining protein MreC -
  ABFT42_RS14010 (ABFT42_14010) mreB 2671949..2672962 (-) 1014 WP_010335164.1 cell shape-determining protein MreB -
  ABFT42_RS14015 (ABFT42_14015) radC 2673054..2673749 (-) 696 WP_168748368.1 RadC family protein -
  ABFT42_RS14020 (ABFT42_14020) - 2673786..2674355 (-) 570 WP_413286448.1 Maf family nucleotide pyrophosphatase -
  ABFT42_RS14025 (ABFT42_14025) - 2674506..2675504 (-) 999 WP_326332331.1 SPOR domain-containing protein -
  ABFT42_RS14030 (ABFT42_14030) comC 2675637..2676383 (-) 747 WP_413286449.1 prepilin peptidase Machinery gene
  ABFT42_RS14035 (ABFT42_14035) - 2676524..2677816 (-) 1293 WP_413286450.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ABFT42_RS14040 (ABFT42_14040) valS 2677876..2680518 (-) 2643 WP_010335170.1 valine--tRNA ligase -
  ABFT42_RS14045 (ABFT42_14045) - 2680966..2681157 (+) 192 WP_010335171.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26601.32 Da        Isoelectric Point: 9.7311

>NTDB_id=1090331 ABFT42_RS14030 WP_413286449.1 2675637..2676383(-) (comC) [Bacillus mojavensis strain C3]
MIPILFVLGLILGSFYYTAGCRIPLHMSIINPRSACSFCRRTLTPAELIPVLSFALLKGKCKSCGQKLSLMYPAAELSTA
CLFAAAGFRFGLSWELIVALLFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLYSWYEGFIGAAAGFLLLAFI
AVITHGGIGGGDIKLLAVIGLVLGVKMLAIAFFFSVLIGALYGTAAVLFGRLGRKQPIPFAPAIAAGSIFAYLYGDSIIS
FYVKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1090331 ABFT42_RS14030 WP_413286449.1 2675637..2676383(-) (comC) [Bacillus mojavensis strain C3]
ATGATTCCGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTACACGGCAGGATGCCGTATCCCCTTACACAT
GTCCATCATAAACCCTCGTTCGGCATGTTCTTTTTGCCGGAGAACCTTAACCCCGGCAGAATTAATCCCTGTTTTATCTT
TTGCTCTGCTAAAAGGCAAATGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTATCCAGCGGCAGAGCTCTCGACAGCG
TGTTTATTTGCAGCCGCGGGATTTCGTTTTGGTTTGTCTTGGGAACTGATTGTTGCGTTGCTGTTTCTTTCTCTTCTTAT
CATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATCATTTCTCCGCTTTATTCATGGTATGAAGGCTTCATAGGTGCGGCTGCCGGTTTTCTTTTGCTGGCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGAGGAGGGGATATTAAATTACTTGCCGTCATCGGCCTTGTGCTTGGTGTGAAAAT
GCTTGCTATCGCGTTTTTCTTTTCCGTACTTATAGGAGCATTGTACGGAACTGCCGCTGTACTGTTCGGAAGGCTGGGCA
GAAAACAGCCGATTCCCTTTGCACCGGCAATTGCGGCAGGAAGCATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAATGGCGTTAGGGTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

80.645

100

0.806

Multiple sequence alignment