Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ABFT42_RS12975 Genome accession   NZ_CP178596
Coordinates   2488456..2488881 (-) Length   141 a.a.
NCBI ID   WP_413286411.1    Uniprot ID   -
Organism   Bacillus mojavensis strain C3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2483456..2493881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS12945 (ABFT42_12945) - 2483715..2483849 (-) 135 WP_268449338.1 hypothetical protein -
  ABFT42_RS12950 (ABFT42_12950) - 2483927..2484655 (-) 729 WP_010335020.1 SGNH/GDSL hydrolase family protein -
  ABFT42_RS12955 (ABFT42_12955) - 2484902..2485654 (-) 753 WP_413286409.1 N-acetylmuramoyl-L-alanine amidase -
  ABFT42_RS12960 (ABFT42_12960) - 2485849..2486475 (+) 627 WP_229146777.1 TVP38/TMEM64 family protein -
  ABFT42_RS12965 (ABFT42_12965) gnd 2486496..2487389 (-) 894 WP_286058301.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  ABFT42_RS12970 (ABFT42_12970) - 2487694..2488422 (+) 729 WP_413286410.1 DUF308 domain-containing protein -
  ABFT42_RS12975 (ABFT42_12975) nucA/comI 2488456..2488881 (-) 426 WP_413286411.1 sporulation protein Machinery gene
  ABFT42_RS12980 (ABFT42_12980) - 2489058..2489408 (+) 351 Protein_2507 sigma-70 family RNA polymerase sigma factor -
  ABFT42_RS12985 (ABFT42_12985) spoIVCA 2489436..2490917 (-) 1482 WP_413287396.1 site-specific DNA recombinase SpoIVCA -
  ABFT42_RS12990 (ABFT42_12990) - 2490854..2491032 (-) 179 Protein_2509 hypothetical protein -
  ABFT42_RS12995 (ABFT42_12995) - 2491483..2492496 (-) 1014 WP_413287397.1 NADP-dependent oxidoreductase -
  ABFT42_RS13000 (ABFT42_13000) - 2492961..2493710 (-) 750 WP_087990793.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15505.72 Da        Isoelectric Point: 5.7615

>NTDB_id=1090327 ABFT42_RS12975 WP_413286411.1 2488456..2488881(-) (nucA/comI) [Bacillus mojavensis strain C3]
MKKWLAMLLLAAAVFLCLLGKDMTAPQQVKGAALYDKVLYFPLSRYPETGDHIRDAIAEGHSDICTIDRDGADKRREESL
KGIPTKPGFDRDEWPMAVCEEGGAGADVRYVRPSDNRGAGSWVGNQMSGYPDGTKVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1090327 ABFT42_RS12975 WP_413286411.1 2488456..2488881(-) (nucA/comI) [Bacillus mojavensis strain C3]
ATGAAAAAATGGCTGGCAATGCTTCTTCTGGCGGCAGCAGTTTTTCTTTGTTTATTGGGAAAGGATATGACGGCTCCGCA
ACAGGTCAAGGGGGCTGCTTTATATGACAAAGTTTTATATTTTCCGTTGTCTCGTTATCCGGAAACCGGGGATCATATAA
GAGATGCGATTGCCGAAGGACATTCTGATATATGTACAATTGATCGTGATGGAGCGGACAAAAGGCGGGAGGAATCATTA
AAAGGAATTCCGACGAAGCCTGGTTTTGATCGAGATGAATGGCCGATGGCAGTTTGTGAAGAAGGAGGCGCCGGAGCCGA
TGTCCGCTATGTAAGGCCTTCTGATAATCGCGGCGCCGGTTCATGGGTAGGAAATCAAATGAGCGGTTATCCAGATGGCA
CCAAAGTGTTGTTTATTGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.484

87.943

0.532

Multiple sequence alignment