Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ABFT42_RS07685 Genome accession   NZ_CP178596
Coordinates   1506536..1507000 (-) Length   154 a.a.
NCBI ID   WP_168747640.1    Uniprot ID   -
Organism   Bacillus mojavensis strain C3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1501536..1512000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS07665 (ABFT42_07665) kinA 1501788..1503608 (+) 1821 WP_168747635.1 sporulation histidine kinase KinA -
  ABFT42_RS07670 (ABFT42_07670) - 1503618..1504801 (-) 1184 Protein_1449 aminotransferase A -
  ABFT42_RS07675 (ABFT42_07675) - 1505003..1505164 (-) 162 WP_229148095.1 hypothetical protein -
  ABFT42_RS07680 (ABFT42_07680) cheV 1505372..1506283 (+) 912 WP_168747638.1 chemotaxis protein CheV -
  ABFT42_RS07685 (ABFT42_07685) kre 1506536..1507000 (-) 465 WP_168747640.1 YkyB family protein Regulator
  ABFT42_RS07690 (ABFT42_07690) - 1507125..1508417 (-) 1293 WP_268505542.1 MFS transporter -
  ABFT42_RS07695 (ABFT42_07695) - 1508493..1508987 (-) 495 WP_229148179.1 L,D-transpeptidase family protein -
  ABFT42_RS07700 (ABFT42_07700) - 1509045..1509905 (-) 861 WP_413287215.1 metallophosphoesterase -
  ABFT42_RS07705 (ABFT42_07705) fadH 1510050..1510814 (+) 765 WP_413287217.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17840.63 Da        Isoelectric Point: 10.4212

>NTDB_id=1090304 ABFT42_RS07685 WP_168747640.1 1506536..1507000(-) (kre) [Bacillus mojavensis strain C3]
MDDHAYSKDLQPTVDNLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQQYVGMKEKPLVANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1090304 ABFT42_RS07685 WP_168747640.1 1506536..1507000(-) (kre) [Bacillus mojavensis strain C3]
ATGGACGACCATGCATACTCGAAAGATCTGCAGCCAACCGTAGATAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAGCAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAGTCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCAAAACACCTATTGCAACAATACGTCGGCATGAAAGAAAAGCCGCTTGTGG
CGAATCGCCAGCAGCCTGCATATCATAAGCCTGTCTTTAAGAAACTCGGCGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

97.403

100

0.974

Multiple sequence alignment