Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ABFT42_RS01980 Genome accession   NZ_CP178596
Coordinates   366530..366967 (-) Length   145 a.a.
NCBI ID   WP_010332985.1    Uniprot ID   -
Organism   Bacillus mojavensis strain C3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 361530..371967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS01935 (ABFT42_01935) - 361817..361933 (+) 117 Protein_337 glutathione-dependent formaldehyde dehydrogenase -
  ABFT42_RS01940 (ABFT42_01940) - 361948..362049 (+) 102 Protein_338 formaldehyde dehydrogenase -
  ABFT42_RS01945 (ABFT42_01945) - 362062..362517 (+) 456 WP_326204061.1 RDD family protein -
  ABFT42_RS01950 (ABFT42_01950) - 362598..362933 (+) 336 WP_413286898.1 YckD family protein -
  ABFT42_RS01955 (ABFT42_01955) - 363070..363489 (+) 420 WP_024120173.1 MarR family winged helix-turn-helix transcriptional regulator -
  ABFT42_RS01960 (ABFT42_01960) - 363480..363818 (+) 339 WP_340887540.1 DUF3147 family protein -
  ABFT42_RS01965 (ABFT42_01965) - 363835..364563 (+) 729 WP_340887538.1 AAA family ATPase -
  ABFT42_RS01970 (ABFT42_01970) - 364636..366069 (+) 1434 WP_268449028.1 glycoside hydrolase family 1 protein -
  ABFT42_RS01975 (ABFT42_01975) nin/comJ 366105..366503 (-) 399 WP_010332984.1 competence protein ComJ Regulator
  ABFT42_RS01980 (ABFT42_01980) nucA/comI 366530..366967 (-) 438 WP_010332985.1 DNA-entry nuclease Machinery gene
  ABFT42_RS01985 (ABFT42_01985) tlpC 367154..368878 (-) 1725 WP_326226625.1 methyl-accepting chemotaxis protein TlpC -
  ABFT42_RS01990 (ABFT42_01990) hxlB 368993..369550 (-) 558 WP_168746908.1 6-phospho-3-hexuloisomerase -
  ABFT42_RS01995 (ABFT42_01995) hxlA 369556..370188 (-) 633 WP_413286899.1 3-hexulose-6-phosphate synthase -
  ABFT42_RS02000 (ABFT42_02000) hxlR 370418..370780 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15987.71 Da        Isoelectric Point: 4.2036

>NTDB_id=1090282 ABFT42_RS01980 WP_010332985.1 366530..366967(-) (nucA/comI) [Bacillus mojavensis strain C3]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDEQKTSQTEEYDETIAFPSERYPETANHIKDAISEGHSDVCTVDRDGAEERR
EQSLKDVPTKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1090282 ABFT42_RS01980 WP_010332985.1 366530..366967(-) (nucA/comI) [Bacillus mojavensis strain C3]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTTGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGAACAAAAAACGTCTCAAACAGAAGAATATGACGAAACAATAGCCTTCCCTTCTGAGCGTTATCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAGATGTGTGCACTGTAGACAGAGACGGAGCTGAGGAACGCCGC
GAACAATCATTGAAAGACGTACCTACCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGATGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

90.278

99.31

0.897

Multiple sequence alignment