Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ABFT42_RS00020 Genome accession   NZ_CP178596
Coordinates   3218..4330 (+) Length   370 a.a.
NCBI ID   WP_168746732.1    Uniprot ID   A0AAP3CR22
Organism   Bacillus mojavensis strain C3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS00005 (ABFT42_00005) dnaA 185..1525 (+) 1341 WP_168746730.1 chromosomal replication initiator protein DnaA -
  ABFT42_RS00010 (ABFT42_00010) dnaN 1719..2855 (+) 1137 WP_010332674.1 DNA polymerase III subunit beta -
  ABFT42_RS00015 (ABFT42_00015) rlbA 2987..3202 (+) 216 WP_003219264.1 ribosome maturation protein RlbA -
  ABFT42_RS00020 (ABFT42_00020) recF 3218..4330 (+) 1113 WP_168746732.1 DNA replication/repair protein RecF Machinery gene
  ABFT42_RS00025 (ABFT42_00025) remB 4348..4593 (+) 246 WP_010332676.1 extracellular matrix regulator RemB -
  ABFT42_RS00030 (ABFT42_00030) gyrB 4649..6565 (+) 1917 WP_010332677.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ABFT42_RS00035 (ABFT42_00035) gyrA 6777..9248 (+) 2472 WP_413286818.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42378.42 Da        Isoelectric Point: 7.3662

>NTDB_id=1090275 ABFT42_RS00020 WP_168746732.1 3218..4330(+) (recF) [Bacillus mojavensis strain C3]
MHIQNLELTSYRNYEHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKKNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLIEVAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1090275 ABFT42_RS00020 WP_168746732.1 3218..4330(+) (recF) [Bacillus mojavensis strain C3]
TTGCATATCCAGAATTTAGAACTGACATCTTACCGCAACTACGAACACGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATTGGAGAAAATGCCCAGGGGAAAACAAACCTCATGGAAGCGATCTATGTCTTGTCCATGGCAAAATCGCATCGGA
CTTCAAATGACAAAGAACTTATCCGATGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGAAAAACGGAGCG
ATTCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATCGAACAGCAAAAGCTCAGCCAGTA
TGTCGGTGCCCTCAACACCATCATGTTTGCGCCGGAAGATTTAAACCTTGTAAAGGGAAGCCCTCAAGTGAGACGGAGGT
TTCTTGACATGGAAATTGGCCAAGTTTCTCCCGTCTACCTGTATGACCTTTCTCTTTACCAGAAGATTCTTTCCCAGCGA
AATCACTTTCTGAAGCAGTTGCAAACAAGAAAACAAACTGACAGAACAATGCTTGATGTTCTGACTGATCAGCTTATTGA
AGTTGCCGCAAAAGTCGTCGTAAAACGTCTGCAATTCACGGCACAGCTCGAAAAATGGGCGCAGCCTATCCATTCGGGCA
TCTCAAGAGGGCTTGAGGAACTAACGCTGAAGTACCATACGGCTCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGCGTCACGCTGTCTGGACCTCATCG
GGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTACGGTTCTCAAGGACAGCAGCGGACGACGGCATTAT
CCCTTAAGCTGGCTGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTGCTGAGT
GAGCTGGATGATTATCGCCAATCGCACTTGCTTCATACCATCCAGGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
CGATGGCATTGATCACGAAACCTTACGGCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

97.838

100

0.978

Multiple sequence alignment