Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACJGE3_RS07750 Genome accession   NZ_CP178562
Coordinates   1644572..1645324 (-) Length   250 a.a.
NCBI ID   WP_146284283.1    Uniprot ID   -
Organism   Bacillus velezensis strain JT-3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1639572..1650324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJGE3_RS07725 (ACJGE3_07725) mreC 1640008..1640871 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  ACJGE3_RS07730 (ACJGE3_07730) mreB 1640902..1641915 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ACJGE3_RS07735 (ACJGE3_07735) radC 1642007..1642702 (-) 696 WP_007408165.1 RadC family protein -
  ACJGE3_RS07740 (ACJGE3_07740) - 1642734..1643303 (-) 570 WP_070082167.1 Maf family protein -
  ACJGE3_RS07745 (ACJGE3_07745) - 1643444..1644445 (-) 1002 WP_369614562.1 SPOR domain-containing protein -
  ACJGE3_RS07750 (ACJGE3_07750) comC 1644572..1645324 (-) 753 WP_146284283.1 prepilin peptidase Machinery gene
  ACJGE3_RS07755 (ACJGE3_07755) - 1645464..1646756 (-) 1293 WP_077722653.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACJGE3_RS07760 (ACJGE3_07760) - 1646815..1649457 (-) 2643 WP_003152640.1 valine--tRNA ligase -
  ACJGE3_RS07765 (ACJGE3_07765) - 1649910..1650101 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27233.97 Da        Isoelectric Point: 9.4293

>NTDB_id=1090169 ACJGE3_RS07750 WP_146284283.1 1644572..1645324(-) (comC) [Bacillus velezensis strain JT-3]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFISKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1090169 ACJGE3_RS07750 WP_146284283.1 1644572..1645324(-) (comC) [Bacillus velezensis strain JT-3]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCTGTTTGCGGATTTTTTCTGCTAGTTTTTATC
ATGTTTATCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGTGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588

Multiple sequence alignment