Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACJGE3_RS03635 Genome accession   NZ_CP178562
Coordinates   797203..797637 (+) Length   144 a.a.
NCBI ID   WP_369614220.1    Uniprot ID   -
Organism   Bacillus velezensis strain JT-3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 792203..802637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJGE3_RS03630 (ACJGE3_03630) - 795703..796914 (-) 1212 WP_369614221.1 cytochrome P450 family protein -
  ACJGE3_RS03635 (ACJGE3_03635) nucA/comI 797203..797637 (+) 435 WP_369614220.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACJGE3_RS03640 (ACJGE3_03640) - 797698..798453 (+) 756 WP_070081855.1 YoaK family protein -
  ACJGE3_RS03645 (ACJGE3_03645) - 798487..798849 (-) 363 WP_070081856.1 hypothetical protein -
  ACJGE3_RS03650 (ACJGE3_03650) - 799042..800370 (-) 1329 WP_369614219.1 S8 family peptidase -
  ACJGE3_RS03655 (ACJGE3_03655) - 800549..800782 (+) 234 WP_058906034.1 hypothetical protein -
  ACJGE3_RS03660 (ACJGE3_03660) - 801038..801745 (+) 708 WP_146283508.1 poly-gamma-glutamate hydrolase family protein -
  ACJGE3_RS03665 (ACJGE3_03665) - 801806..802258 (+) 453 WP_014305039.1 OsmC family protein -
  ACJGE3_RS03670 (ACJGE3_03670) - 802272..802625 (-) 354 WP_003154073.1 DMT family transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15486.38 Da        Isoelectric Point: 6.7098

>NTDB_id=1090150 ACJGE3_RS03635 WP_369614220.1 797203..797637(+) (nucA/comI) [Bacillus velezensis strain JT-3]
MNAFMKWAASLLLVISLQFGLTGAGVHSDSAARAASQYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1090150 ACJGE3_RS03635 WP_369614220.1 797203..797637(+) (nucA/comI) [Bacillus velezensis strain JT-3]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCGTCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCAATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCAGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGCTATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486

Multiple sequence alignment