Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACLZ0H_RS14790 Genome accession   NZ_CP178548
Coordinates   3014664..3015293 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain WWCOL-256     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3009664..3020293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZ0H_RS14775 (ACLZ0H_14775) helD 3009906..3011960 (-) 2055 WP_000420536.1 DNA helicase IV -
  ACLZ0H_RS14780 (ACLZ0H_14780) yccF 3012083..3012529 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACLZ0H_RS14785 (ACLZ0H_14785) yccS 3012539..3014701 (+) 2163 WP_000875020.1 YccS family putative transporter -
  ACLZ0H_RS14790 (ACLZ0H_14790) sxy/tfoX 3014664..3015293 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACLZ0H_RS14795 (ACLZ0H_14795) sulA 3015512..3016021 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACLZ0H_RS14800 (ACLZ0H_14800) ompA 3016378..3017418 (+) 1041 WP_000750416.1 porin OmpA -
  ACLZ0H_RS14805 (ACLZ0H_14805) matP 3017494..3017946 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACLZ0H_RS14810 (ACLZ0H_14810) ycbZ 3018132..3019892 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1090095 ACLZ0H_RS14790 WP_000839153.1 3014664..3015293(-) (sxy/tfoX) [Escherichia coli strain WWCOL-256]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1090095 ACLZ0H_RS14790 WP_000839153.1 3014664..3015293(-) (sxy/tfoX) [Escherichia coli strain WWCOL-256]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment