Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACL6C3_RS22030 Genome accession   NZ_CP178543
Coordinates   5446033..5447691 (+) Length   552 a.a.
NCBI ID   WP_413161185.1    Uniprot ID   -
Organism   Capilliphycus salinus ALCB114379 voucher ALCB 114379     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5441033..5452691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6C3_RS22010 (ACL6C3_22010) - 5442300..5443055 (-) 756 WP_413161181.1 metallophosphoesterase family protein -
  ACL6C3_RS22015 (ACL6C3_22015) - 5443098..5443847 (-) 750 WP_413161182.1 DUF1995 family protein -
  ACL6C3_RS22020 (ACL6C3_22020) - 5443938..5445113 (-) 1176 WP_413161183.1 cysteine desulfurase family protein -
  ACL6C3_RS22025 (ACL6C3_22025) - 5445226..5445627 (-) 402 WP_413161184.1 hypothetical protein -
  ACL6C3_RS22030 (ACL6C3_22030) comA 5446033..5447691 (+) 1659 WP_413161185.1 DUF655 domain-containing protein Machinery gene
  ACL6C3_RS22035 (ACL6C3_22035) - 5447754..5448410 (+) 657 WP_413161186.1 DUF1295 domain-containing protein -
  ACL6C3_RS22040 (ACL6C3_22040) - 5448513..5449100 (+) 588 WP_413161187.1 Uma2 family endonuclease -
  ACL6C3_RS22045 (ACL6C3_22045) - 5449090..5449383 (-) 294 WP_413161188.1 UPF0175 family protein -
  ACL6C3_RS22050 (ACL6C3_22050) proS 5449515..5451329 (+) 1815 WP_413161189.1 proline--tRNA ligase -
  ACL6C3_RS22055 (ACL6C3_22055) - 5451613..5452062 (+) 450 WP_413161190.1 ATP synthase subunit I -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 61712.88 Da        Isoelectric Point: 5.4119

>NTDB_id=1090044 ACL6C3_RS22030 WP_413161185.1 5446033..5447691(+) (comA) [Capilliphycus salinus ALCB114379 voucher ALCB 114379]
MHLFKKNRLILGLAVLFALLLGGRFLLEKKPSQSTLKPPLETLPQDGLIQAYFNQSQASVYTEPYRQQTRFGDDLEQIII
DTIKTANSSVDVAVQELRLPKIAEVLVNRHQAGVKVRIILENSYSRPWSFLSENEVNQLSETERDRYLEAVQLIDINQDG
NLSTDEINQRDALVILNNAKVSLIDDTADGSKGSGLMHHKFVIVDGKTVIVTSANFTLSGTHGDLDEPESRGNANNLLKI
ESSQLARLFTQEFNLMWGDGPGGEPDSQFGTKKPYRRVENVTVGNTPVFVQFAPTPRSQTWENSVNGLIAKTLTESKQSI
DFALFVFSDQRLVDVMETTLQRPITLRGMIDPGFAYRNYSEMLDMMGVAAVSNCKYEDENRPWKQPISTVGVPNLSPGDK
LHHKFGIVDNEVVITGSQNWTEAANTNNDETLIVIKNPTVAAHFNREFNRLYDTATLGLPAGILAKFQRDIEACQGNIET
VSKPPRWSLGYKVNLNTATLEELETLPGVGPKLAQRIIQTRQQQPFTSLEDLQRVSGIGPKMTENLRDKVTW

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=1090044 ACL6C3_RS22030 WP_413161185.1 5446033..5447691(+) (comA) [Capilliphycus salinus ALCB114379 voucher ALCB 114379]
GTGCATTTATTCAAAAAAAATCGATTAATTCTCGGTTTGGCGGTTTTATTCGCTTTGCTGTTGGGCGGACGTTTTTTGCT
GGAGAAAAAACCCTCTCAGTCTACTCTCAAACCGCCTCTAGAAACTTTACCCCAAGATGGGTTAATTCAAGCTTACTTTA
ATCAGTCTCAAGCTTCTGTTTATACCGAACCCTACCGCCAACAAACTCGCTTCGGAGATGACCTCGAACAAATTATCATA
GATACCATTAAAACGGCAAATTCTAGCGTTGATGTGGCGGTTCAAGAATTGCGTTTACCGAAAATTGCCGAAGTTCTGGT
TAACCGACATCAAGCCGGGGTTAAAGTTAGAATTATTCTCGAAAATAGTTACAGTCGTCCTTGGAGTTTTTTAAGCGAAA
ATGAAGTGAATCAACTCTCCGAAACTGAACGCGATCGCTATTTGGAAGCGGTGCAATTAATTGATATTAATCAGGATGGA
AATCTCTCAACCGATGAAATCAATCAACGGGATGCTTTAGTTATCCTGAATAACGCCAAAGTTTCTCTAATTGATGATAC
CGCAGATGGTTCAAAAGGTAGCGGGTTAATGCACCATAAATTTGTGATTGTTGACGGGAAAACGGTAATTGTGACTTCGG
CTAATTTTACCCTCAGCGGAACTCACGGCGACTTGGATGAACCGGAAAGTCGGGGAAATGCCAATAACTTATTAAAAATA
GAAAGTTCACAACTCGCCCGTTTATTCACTCAAGAATTTAATTTGATGTGGGGAGACGGTCCCGGAGGCGAACCGGATAG
TCAATTTGGGACGAAAAAACCTTATCGAAGGGTGGAAAATGTTACCGTTGGAAATACACCCGTTTTCGTTCAATTTGCAC
CGACTCCCCGCAGTCAAACCTGGGAAAATAGCGTTAATGGTTTGATTGCCAAAACGTTAACTGAAAGTAAACAATCAATC
GATTTTGCGTTGTTTGTTTTTTCCGATCAAAGGTTAGTTGATGTGATGGAAACAACCCTTCAACGTCCGATAACATTGCG
GGGAATGATCGATCCGGGTTTTGCTTATCGAAATTATAGCGAAATGTTGGATATGATGGGAGTTGCTGCGGTAAGTAACT
GCAAATATGAAGACGAAAACCGTCCCTGGAAACAGCCGATTTCTACCGTTGGTGTTCCCAATTTATCCCCCGGTGATAAG
TTACATCATAAGTTTGGAATTGTTGATAATGAAGTTGTTATTACAGGTTCTCAAAACTGGACGGAAGCCGCCAATACGAA
CAACGACGAAACCTTAATTGTGATTAAAAATCCCACCGTCGCCGCCCATTTTAACCGGGAATTTAACCGACTTTACGACA
CCGCAACGTTAGGACTTCCTGCGGGAATTTTAGCTAAATTTCAACGGGATATAGAAGCTTGTCAGGGAAACATTGAAACC
GTTTCAAAACCTCCCCGTTGGAGTTTGGGATACAAAGTTAACTTAAATACTGCTACTTTAGAAGAATTAGAAACCTTACC
CGGAGTCGGTCCTAAATTAGCCCAACGCATCATTCAAACCCGCCAACAACAACCGTTTACCTCTTTAGAAGACTTGCAAC
GGGTGTCGGGAATAGGTCCGAAAATGACCGAAAATTTGCGGGATAAGGTAACATGGTAG

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(79-257)

PLD-like domain (PLDc_2)

(311-451)

Helix-hairpin-helix motif (HHH_3)

(492-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

48.27

99.457

0.48

Multiple sequence alignment