Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HW10_RS09385 Genome accession   NZ_CP008856
Coordinates   1964465..1964794 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F23197     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1959465..1969794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW10_RS09370 (HW10_30450) - 1960265..1961221 (+) 957 WP_003104579.1 UDP-glucose 4-epimerase family protein -
  HW10_RS09375 (HW10_04185) - 1961223..1962242 (+) 1020 WP_003158833.1 MraY family glycosyltransferase -
  HW10_RS09380 (HW10_04180) - 1962277..1964274 (+) 1998 WP_023088173.1 polysaccharide biosynthesis protein -
  HW10_RS09385 (HW10_04175) comEA/comE1 1964465..1964794 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  HW10_RS09395 (HW10_04165) - 1965011..1966207 (-) 1197 WP_031755715.1 amino acid aminotransferase -
  HW10_RS09400 (HW10_04160) uvrB 1966395..1968407 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=108992 HW10_RS09385 WP_003091430.1 1964465..1964794(+) (comEA/comE1) [Pseudomonas aeruginosa strain F23197]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=108992 HW10_RS09385 WP_003091430.1 1964465..1964794(+) (comEA/comE1) [Pseudomonas aeruginosa strain F23197]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment